hlatyping
HLA typist
An analysis pipeline for HLA typing from next-generation sequencing data using integer linear programming and Nextflow
Precision HLA typing from next-generation sequencing data
63 stars
156 watching
30 forks
Language: Nextflow
last commit: about 1 month ago
Linked from 1 awesome list
dnahlahla-typingimmunologynextflownf-coreoptitypepersonalized-medicinepipelinernaworkflow
Related projects:
| Repository | Description | Stars |
|---|---|---|
 nationalgenomicsinfrastructure/icing | An approach to analyzing OxfordNanopore reads for HLA typing using Python | 13 |
| nf-core/eager | Analyzes ancient DNA sequencing data with tools and workflows optimized for reproducibility and scalability | 148 |
| nf-core/rnafusion | A bioinformatics pipeline for detecting and analyzing gene fusions from RNA sequencing data | 143 |
| nf-core/sarek | Automated workflow for detecting germline or somatic variants in genomic sequencing data | 409 |
| nf-core/tools | Provides a set of reusable Python functions and tools for bioinformatics and workflow management. | 242 |
| nf-core/chipseq | A bioinformatics analysis pipeline for processing ChIP-seq data | 194 |
| nf-core/smrnaseq | An automated analysis pipeline for small RNA sequencing data | 74 |
| nf-core/rnaseq | An RNA sequencing analysis pipeline that performs quality control, trimming, alignment, and quantification of gene expression from raw sequencing data. | 916 |
| nf-core/viralrecon | An assembly and variant calling pipeline for viral samples | 124 |
 nextflow-io/rnaseq-nf | A pipeline for quantifying genomic features from short read data using Nextflow and various software components. | 72 |
| nf-core/lncpipe | Analyzes long non-coding RNA molecules from RNA-seq data | 33 |
 zuberlab/crispr-process-nf | Tools for processing CRISPR and shRNA data in a high-throughput screening workflow | 3 |
 cbcrg/kallisto-nf | A tool suite implementing Kallisto and Sleuth RNA-seq analysis pipelines in Nextflow | 22 |
 h3abionet/chipimputation | An imputation workflow tool for genomics data analysis | 20 |
| nf-core/methylseq | A bioinformatics pipeline for analyzing methylation sequencing data | 140 |