eager

DNA analysis pipeline

Analyzes ancient DNA sequencing data with tools and workflows optimized for reproducibility and scalability

A fully reproducible and state-of-the-art ancient DNA analysis pipeline

GitHub

152 stars
161 watching
82 forks
Language: Nextflow
last commit: almost 2 years ago
Linked from 1 awesome list

adnaancient-dna-analysisancientdnabioinformaticsgenomemetagenomicsnextflownf-corepathogen-genomicspipelinepopulation-geneticsworkflow

Backlinks from these awesome lists:

Related projects:

RepositoryDescriptionStars
nf-core/rnafusionA bioinformatics pipeline for detecting and analyzing gene fusions from RNA sequencing data147
nf-core/hlatypingAn analysis pipeline for HLA typing from next-generation sequencing data using integer linear programming and Nextflow63
crickbabs/babs-adnaseqA Nextflow pipeline script for processing ancient DNA sequencing data.2
biocorecrg/vectorqcAnalyzes DNA sequencing data from circular vectors to generate annotated maps and GenBank files.5
nf-core/rnaseqAn RNA sequencing analysis pipeline that performs quality control, trimming, alignment, and quantification of gene expression from raw sequencing data.941
nf-core/lncpipeAnalyzes long non-coding RNA molecules from RNA-seq data34
nf-core/chipseqA bioinformatics analysis pipeline for processing ChIP-seq data199
nf-core/sarekA workflow designed to detect germline and somatic variants from WGS and targeted sequencing data using bioinformatics tools.412
nf-core/smrnaseqAn automated analysis pipeline for small RNA sequencing data74
nextflow-io/rnaseq-nfA pipeline for quantifying genomic features from short read data using Nextflow and various software components.74
nf-core/methylseqBioinformatics pipeline for analyzing DNA methylation data from bisulfite sequencing148
nf-core/viralreconAn assembly and variant calling pipeline for viral samples128
nf-core/magAn assembly and binning pipeline for analyzing metagenomes219
nf-core/pangenomeConstructs a graph from a collection of genetic sequences while preserving large-scale variation78
cdcgov/mycosnp-nfAn analysis pipeline for whole genome sequencing of fungal organisms.38