eager
DNA analysis pipeline
Analyzes ancient DNA sequencing data with tools and workflows optimized for reproducibility and scalability
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
152 stars
161 watching
82 forks
Language: Nextflow
last commit: about 1 month ago
Linked from 1 awesome list
adnaancient-dna-analysisancientdnabioinformaticsgenomemetagenomicsnextflownf-corepathogen-genomicspipelinepopulation-geneticsworkflow
Related projects:
Repository | Description | Stars |
---|---|---|
nf-core/rnafusion | A bioinformatics pipeline for detecting and analyzing gene fusions from RNA sequencing data | 147 |
nf-core/hlatyping | An analysis pipeline for HLA typing from next-generation sequencing data using integer linear programming and Nextflow | 63 |
crickbabs/babs-adnaseq | A Nextflow pipeline script for processing ancient DNA sequencing data. | 2 |
biocorecrg/vectorqc | Analyzes DNA sequencing data from circular vectors to generate annotated maps and GenBank files. | 5 |
nf-core/rnaseq | An RNA sequencing analysis pipeline that performs quality control, trimming, alignment, and quantification of gene expression from raw sequencing data. | 941 |
nf-core/lncpipe | Analyzes long non-coding RNA molecules from RNA-seq data | 34 |
nf-core/chipseq | A bioinformatics analysis pipeline for processing ChIP-seq data | 199 |
nf-core/sarek | A workflow designed to detect germline and somatic variants from WGS and targeted sequencing data using bioinformatics tools. | 412 |
nf-core/smrnaseq | An automated analysis pipeline for small RNA sequencing data | 74 |
nextflow-io/rnaseq-nf | A pipeline for quantifying genomic features from short read data using Nextflow and various software components. | 74 |
nf-core/methylseq | Bioinformatics pipeline for analyzing DNA methylation data from bisulfite sequencing | 148 |
nf-core/viralrecon | An assembly and variant calling pipeline for viral samples | 128 |
nf-core/mag | An assembly and binning pipeline for analyzing metagenomes | 219 |
nf-core/pangenome | Constructs a graph from a collection of genetic sequences while preserving large-scale variation | 78 |
cdcgov/mycosnp-nf | An analysis pipeline for whole genome sequencing of fungal organisms. | 38 |