mycosnp-nf
Fungal seq pipeline
An analysis pipeline for whole genome sequencing of fungal organisms.
CDCgov/mycosnp-nf
38 stars
3 watching
33 forks
Language: Nextflow
last commit: almost 2 years agoLinked from 1 awesome list
myconextflownf-coresnp
Related projects:
| Repository | Description | Stars |
|---|---|---|
 guigolab/grape-nf | Automated RNA-seq analysis pipeline using Nextflow and Docker/Singularity containers | 37 |
 cbcrg/grape-nf | A pipeline for RNA-Seq analyses using nextflow | 2 |
| guigolab/chip-nf | Automated pipeline for processing ChIP-seq data | 17 |
 nf-core/chipseq | A bioinformatics analysis pipeline for processing ChIP-seq data | 199 |
| nf-core/sarek | A workflow designed to detect germline and somatic variants from WGS and targeted sequencing data using bioinformatics tools. | 412 |
| nf-core/smrnaseq | An automated analysis pipeline for small RNA sequencing data | 74 |
| cbcrg/kallisto-nf | A tool suite implementing Kallisto and Sleuth RNA-seq analysis pipelines in Nextflow | 22 |
| nf-core/rnafusion | A bioinformatics pipeline for detecting and analyzing gene fusions from RNA sequencing data | 147 |
| nf-core/viralrecon | An assembly and variant calling pipeline for viral samples | 128 |
 bcbio/bcbio-nextgen | A high-level configuration file drives parallel variant calling and analysis on sequencing data. | 995 |
 nextflow-io/rnaseq-nf | A pipeline for quantifying genomic features from short read data using Nextflow and various software components. | 74 |
 crg-cnag/callings-nf | A Nextflow pipeline for RNA sequencing variant calling with GATK best practices | 132 |
| nf-core/eager | Analyzes ancient DNA sequencing data with tools and workflows optimized for reproducibility and scalability | 152 |
 biocorecrg/mop2 | A Nextflow-based workflow for processing and analyzing Oxford Nanopore direct RNA sequencing data | 23 |
| cdcgov/phoenix | An open-source software pipeline for analyzing short-read sequencing data from healthcare-associated and antimicrobial resistant pathogens. | 60 |