chip-nf
ChIP analysis tool
Automated pipeline for processing ChIP-seq data
An automated ChIP-seq pipeline using Nextfow
17 stars
7 watching
4 forks
Language: Nextflow
last commit: almost 4 years agoLinked from 1 awesome list
chip-seqcrgguigoguigolab-nfnextflowngspipeline
Related projects:
| Repository | Description | Stars |
|---|---|---|
| guigolab/grape-nf | Automated RNA-seq analysis pipeline using Nextflow and Docker/Singularity containers | 37 |
 dowell-lab/chip-flow | A Nextflow pipeline implementation of the Dowell Lab ChIP-seq analysis workflow | 4 |
 nf-core/chipseq | A bioinformatics analysis pipeline for processing ChIP-seq data | 199 |
| guigolab/ipsa-nf | An integrative pipeline for analyzing splicing events from RNA sequencing data | 9 |
 cdcgov/mycosnp-nf | An analysis pipeline for whole genome sequencing of fungal organisms. | 38 |
 crg-cnag/callings-nf | A Nextflow pipeline for RNA sequencing variant calling with GATK best practices | 132 |
| guigolab/fa-nf | A pipeline for annotating protein function from non-model organisms using Nextflow and various bioinformatics tools | 17 |
 cbcrg/kallisto-nf | A tool suite implementing Kallisto and Sleuth RNA-seq analysis pipelines in Nextflow | 22 |
| cbcrg/grape-nf | A pipeline for RNA-Seq analyses using nextflow | 2 |
| nf-core/smrnaseq | An automated analysis pipeline for small RNA sequencing data | 74 |
 nextflow-io/rnaseq-nf | A pipeline for quantifying genomic features from short read data using Nextflow and various software components. | 74 |
 chipsalliance/fpga-tool-perf | Analyzes performance of tools used in Field-Programmable Gate Arrays (FPGAs) | 102 |
| dowell-lab/rnaseq-flow | A Nextflow pipeline for processing RNA-seq data | 8 |
| nextflow-io/nf-hack17 | An initiative to develop and showcase Nextflow-based pipelines for bioinformatics analysis | 10 |
 qbic-pipelines/icgc-featurecounts | Automated pipeline for featureCounts on RNAseq BAM files from ICGC datasets | 3 |