ipsa-nf
Splicing analyzer
An integrative pipeline for analyzing splicing events from RNA sequencing data
Integrative Pipeline for Splicing Analyses (IPSA) in Nextflow
9 stars
5 watching
5 forks
Language: Perl
last commit: about 7 years agoLinked from 1 awesome list
bioinformaticscrggenomicsguigonextflowngspipelinerna-seqsplice-junctionssplicing-analysessplicing-eventsplicing-quantification
nextflow-io/awesome-nextflowRelated projects:
| Repository | Description | Stars |
|---|---|---|
| guigolab/grape-nf | Automated RNA-seq analysis pipeline using Nextflow and Docker/Singularity containers | 37 |
 yeolab/outrigger | Automates detection and quantification of alternative splicing events from RNA seq data using graph databases. | 65 |
| guigolab/chip-nf | Automated pipeline for processing ChIP-seq data | 17 |
 evanfloden/vast-tools-nf | A Nextflow implementation of VAST-TOOLS for profiling alternative splicing events in RNA-Seq data | 5 |
 comprna/suppa | An analysis tool for studying splicing at different levels across multiple conditions | 264 |
 odiogosilva/innuca-nf | A software framework for implementing high-quality assembly, quality control, and annotation of bacterial genomes | 3 |
 cbcrg/grape-nf | A pipeline for RNA-Seq analyses using nextflow | 2 |
 pachterlab/cwgflhgcchap_2021 | Analyzing multiplexed single-cell RNA-seq data from a marine organism, providing tools for preprocessing, clustering, and analysis of gene expression across different cell types. | 2 |
| guigolab/fa-nf | A pipeline for annotating protein function from non-model organisms using Nextflow and various bioinformatics tools | 17 |
 dowell-lab/rnaseq-flow | A Nextflow pipeline for processing RNA-seq data | 8 |
 ncbi-hackathons/spew | Automates the packaging and distribution of bioinformatics pipelines for seamless deployment on various workstations. | 26 |
 nf-core/rnaseq | An RNA sequencing analysis pipeline that performs quality control, trimming, alignment, and quantification of gene expression from raw sequencing data. | 941 |
| nf-core/rnafusion | A bioinformatics pipeline for detecting and analyzing gene fusions from RNA sequencing data | 147 |
| nf-core/smrnaseq | An automated analysis pipeline for small RNA sequencing data | 74 |
| cbcrg/kallisto-nf | A tool suite implementing Kallisto and Sleuth RNA-seq analysis pipelines in Nextflow | 22 |