smrnaseq
RNA seq processor
An automated analysis pipeline for small RNA sequencing data
A small-RNA sequencing analysis pipeline
74 stars
147 watching
125 forks
Language: Nextflow
last commit: 9 days ago
Linked from 1 awesome list
nextflownf-corepipelinesmall-rnasmrna-seqworkflow
Related projects:
Repository | Description | Stars |
---|---|---|
nf-core/rnaseq | An RNA sequencing analysis pipeline that performs quality control, trimming, alignment, and quantification of gene expression from raw sequencing data. | 916 |
nf-core/chipseq | A bioinformatics analysis pipeline for processing ChIP-seq data | 194 |
abreschi/shortrna-nf | A pipeline tool for processing short RNA-seq data from start to finish. | 3 |
nf-core/rnafusion | A bioinformatics pipeline for detecting and analyzing gene fusions from RNA sequencing data | 143 |
dowell-lab/rnaseq-flow | A Nextflow pipeline for processing RNA-seq data | 8 |
nf-core/lncpipe | Analyzes long non-coding RNA molecules from RNA-seq data | 33 |
nextflow-io/rnaseq-nf | A pipeline for quantifying genomic features from short read data using Nextflow and various software components. | 72 |
biocorecrg/mop2 | A Nextflow-based workflow for processing and analyzing nanopore RNA sequencing data | 23 |
cbcrg/kallisto-nf | A tool suite implementing Kallisto and Sleuth RNA-seq analysis pipelines in Nextflow | 22 |
guigolab/grape-nf | Automated RNA-seq analysis pipeline using Nextflow and Docker/Singularity containers | 37 |
cbcrg/grape-nf | A pipeline for RNA-Seq analyses using nextflow | 2 |
nf-core/methylseq | A bioinformatics pipeline for analyzing methylation sequencing data | 140 |
nf-core/sarek | Automated workflow for detecting germline or somatic variants in genomic sequencing data | 409 |
zuberlab/crispr-process-nf | Tools for processing CRISPR and shRNA data in a high-throughput screening workflow | 3 |
nf-core/eager | Analyzes ancient DNA sequencing data with tools and workflows optimized for reproducibility and scalability | 148 |