crispr-process-nf

Data processor

Tools for processing CRISPR and shRNA data in a high-throughput screening workflow

Process CRISPR and shRNA functional genetic screening data

GitHub

3 stars
3 watching
1 forks
Language: Nextflow
last commit: almost 2 years ago
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bioinformaticscrispr-cas9nextflowshrnasingularity

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