flow
Consensus assembly and variant calling workflow.
AI summary
Workflow
Consensus assembly and variant calling workflow utilizing Nextflow for efficient processing of biological data
- stars
- 12
- forks
- 7
- watching
- 13
- awesome list
- 1
Similar projects
Found by comparing what the projects do, not just their names.
Validation processor
A validation workflow implemented in a programming language of choice, designed to ensure data accuracy and consistency.
Sequence analyzer
Automates sequence analysis from HML files using blast algorithms
Bioinformatics pipeline project
An initiative to develop and showcase Nextflow-based pipelines for bioinformatics analysis
Bioinformatics toolkit
Provides a set of reusable Python functions and tools for bioinformatics and workflow management.
Pipeline wrapper
Automates the packaging and distribution of bioinformatics pipelines for seamless deployment on various workstations.
Data processor
Tools for processing CRISPR and shRNA data in a high-throughput screening workflow
Bioinformatics workflow manager
A Nextflow-based bioinformatics workflow framework providing tools and examples for automating computational workflows in life sciences research
Variant caller
A Nextflow-based pipeline for somatic variant calling using mutect
Viral genome assembler
An assembly and variant calling pipeline for viral samples
Coverage calculator
Computation pipeline for calculating genomic coverage from sequencing data using samtools mpileup
Proteogenomics pipelines
Versioned and shareable computational biology workflows for proteogenomics analysis.
Variant detector
A Nextflow-based pipeline for detecting structural variants in whole-genome reads using the Cortex-Var algorithm.
Variant caller
A Nextflow pipeline for RNA sequencing variant calling with GATK best practices
Nextflow Tutorial
A tutorial project providing hands-on experience with Nextflow and bioinformatics pipelines
RNA seq pipeline
A Nextflow-based workflow for processing and analyzing Oxford Nanopore direct RNA sequencing data
Featured in 1 awesome list
Each link jumps to the spot where the list mentions flow.