nf-hack17-tutorial

Nextflow Tutorial

A tutorial project providing hands-on experience with Nextflow and bioinformatics pipelines

Nextflow basic tutorial for newbie users

GitHub

32 stars
7 watching
19 forks
Language: Nextflow
last commit: over 6 years ago
Linked from 1 awesome list

bioinformaticsdockergenomicsnextflowsingularitytutorial

Backlinks from these awesome lists:

Related projects:

Repository Description Stars
nextflow-io/nf-hack17 An initiative to develop and showcase Nextflow-based pipelines for bioinformatics analysis 10
nextflow-io/crg-course-nov16 A tutorial project on using Nextflow and Docker for implementing a RNA-Seq pipeline 23
nextflow-io/rnaseq-nf A pipeline for quantifying genomic features from short read data using Nextflow and various software components. 72
biocorecrg/bionextflow A collection of reusable modules and sub-workflows for Nextflow pipelines in bioinformatics 26
nextflow-io/elixir-workshop-21 A tutorial project demonstrating Nextflow workflow management for Elixir workflows 5
nextflow-io/nf-sqldb Provides support for interacting with SQL databases in workflow scripts 26
ncbi-hackathons/spew Automates the packaging and distribution of bioinformatics pipelines for seamless deployment on various workstations. 26
nf-core/tools Provides a set of reusable Python functions and tools for bioinformatics and workflow management. 242
nextflow-io/patterns A curated collection of reusable patterns and techniques for implementing Nextflow workflows 334
shaze/nextflow-course Teaches Nextflow DSL2 using a tutorial-style course with exercises 6
nf-core/rnafusion A bioinformatics pipeline for detecting and analyzing gene fusions from RNA sequencing data 143
zuberlab/crispr-process-nf Tools for processing CRISPR and shRNA data in a high-throughput screening workflow 3
ncbi-hackathons/atacflow A Nextflow-based pipeline for performing ATAC-seq analysis 14
guigolab/grape-nf Automated RNA-seq analysis pipeline using Nextflow and Docker/Singularity containers 37
bionode/biohacker A workshop project providing examples and usage guidance for using bionode in bioinformatics pipelines 5