nf-sqldb

SQL DB plugin

Provides support for interacting with SQL databases in workflow scripts

SQL support plugin for Nextflow

GitHub

26 stars
5 watching
1 forks
Language: Groovy
last commit: almost 2 years ago
Linked from 1 awesome list


Backlinks from these awesome lists:

Related projects:

RepositoryDescriptionStars
nextflow-io/nf-hack17-tutorialA tutorial project providing hands-on experience with Nextflow and bioinformatics pipelines32
nextflow-io/nf-hack17An initiative to develop and showcase Nextflow-based pipelines for bioinformatics analysis10
edmundmiller/duckdb-nfAn implementation of DuckDB in Nextflow, providing a workflow-based interface for data analysis and processing.2
nextflow-io/patternsA curated collection of reusable patterns and techniques for implementing Nextflow workflows336
nextflow-io/vscode-language-nextflowProvides language support and features for a workflow scripting language in a popular integrated development environment.32
nextflow-io/rnaseq-nfA pipeline for quantifying genomic features from short read data using Nextflow and various software components.74
leporo/sqlfA fast and flexible SQL query builder for Go.146
nextflow-io/elixir-workshop-21A tutorial project demonstrating Nextflow workflow management for Elixir workflows5
hyperf/databaseA PHP-based library providing an ORM and coroutine-friendly interface to interact with databases.17
evanfloden/tuxedo-nfA Nextflow implementation of the Tuxedo Suite of Tools workflow for RNA-seq data analysis10
nf-core/toolsProvides a set of reusable Python functions and tools for bioinformatics and workflow management.245
torodb/torodbTwo products that use this technology provide a bridge between document-oriented and SQL databases.12
ggrothendieck/sqldfAn R package that enables the execution of SQL statements on data frames without requiring a separate database installation.250
peterk87/sublime-nextflowProvides syntax highlighting and snippets for Nextflow workflows in Sublime Text 4 to improve development efficiency.24
bittorrent/sqltorrentA custom VFS for SQLite that allows querying an sqlite database within a torrent.281