tuxedo-nf
RNA-seq pipeline
A Nextflow implementation of the Tuxedo Suite of Tools workflow for RNA-seq data analysis
A Nextflow implementation of the Tuxedo Suite of Tools: HISAT, StringTie & Ballgown
10 stars
3 watching
4 forks
Language: Nextflow
last commit: over 6 years ago
Linked from 1 awesome list
Related projects:
Repository | Description | Stars |
---|---|---|
evanfloden/vast-tools-nf | A Nextflow implementation of VAST-TOOLS for profiling alternative splicing events in RNA-Seq data | 5 |
evanfloden/lncrna-annotation-nf | A pipeline for annotating long non-coding RNAs from RNA sequencing data using the STAR, Cufflinks, and FEELnc tools. | 11 |
fredericlemoine/rna-pipeline | A Nextflow-based pipeline for processing RNA-Seq data using Docker containers | 4 |
guigolab/grape-nf | Automated RNA-seq analysis pipeline using Nextflow and Docker/Singularity containers | 37 |
nextflow-io/rnaseq-nf | A pipeline for quantifying genomic features from short read data using Nextflow and various software components. | 72 |
dowell-lab/rnaseq-flow | A Nextflow pipeline for processing RNA-seq data | 8 |
cbcrg/kallisto-nf | A tool suite implementing Kallisto and Sleuth RNA-seq analysis pipelines in Nextflow | 22 |
nf-core/rnaseq | An RNA sequencing analysis pipeline that performs quality control, trimming, alignment, and quantification of gene expression from raw sequencing data. | 916 |
nf-core/smrnaseq | An automated analysis pipeline for small RNA sequencing data | 74 |
nf-core/rnafusion | A bioinformatics pipeline for detecting and analyzing gene fusions from RNA sequencing data | 143 |
cbcrg/grape-nf | A pipeline for RNA-Seq analyses using nextflow | 2 |
nextflow-io/crg-course-nov16 | A tutorial project on using Nextflow and Docker for implementing a RNA-Seq pipeline | 23 |
nf-core/lncpipe | Analyzes long non-coding RNA molecules from RNA-seq data | 33 |
griffithlab/rnaseq_tutorial | An educational tutorial and working demonstration pipeline for RNA-seq analysis on the cloud | 1,337 |
nextflow-io/nf-hack17 | An initiative to develop and showcase Nextflow-based pipelines for bioinformatics analysis | 10 |