rnaseq_tutorial

RNA-seq pipeline

An educational tutorial and working demonstration pipeline for RNA-seq analysis on the cloud

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

GitHub

1k stars
182 watching
620 forks
Language: R
last commit: over 3 years ago
Linked from 1 awesome list


Backlinks from these awesome lists:

Related projects:

RepositoryDescriptionStars
bioinformatics-core-shared-training/univcambridge_scrnaseq_nov2021An educational resource providing an introduction to single-cell RNA-seq analysis with interactive tutorials and resources.3
dowell-lab/rnaseq-flowA Nextflow pipeline for processing RNA-seq data8
hemberg-lab/scrna.seq.courseAn open-source teaching package for the computational analysis of single-cell RNA-seq data using R.673
guigolab/grape-nfAutomated RNA-seq analysis pipeline using Nextflow and Docker/Singularity containers37
nf-core/rnaseqAn RNA sequencing analysis pipeline that performs quality control, trimming, alignment, and quantification of gene expression from raw sequencing data.941
snakemake-workflows/single-cell-rna-seqA workflow generator for single-cell RNA-seq data analysis100
hoohm/dropseqpipeA pre-processing workflow for SingleCell RNASeq data from raw sequencing data to final count matrix with QC plots.147
fredericlemoine/rna-pipelineA Nextflow-based pipeline for processing RNA-Seq data using Docker containers4
kharchenkolab/dropestA software pipeline for analyzing single-cell RNA-seq data from droplet-based experiments88
pachterlab/kallistobustoolsA workflow for pre-processing single-cell RNA-seq data using Kallisto and Bustools.115
crazyhottommy/rna-seq-analysisA collection of resources and tools for analyzing RNA sequencing data using Python and Snakemake workflows951
hbctraining/scrna-seq_onlineTeaching materials for a workshop on single-cell RNA-seq data analysis in R533
theislab/single-cell-tutorialProvides a comprehensive tutorial and workflow for single-cell RNA-seq analysis1,419
cbcrg/kallisto-nfA tool suite implementing Kallisto and Sleuth RNA-seq analysis pipelines in Nextflow22
cbcrg/grape-nfA pipeline for RNA-Seq analyses using nextflow2