dropEst
Single-cell RNA-seq analysis pipeline
A software pipeline for analyzing single-cell RNA-seq data from droplet-based experiments
Pipeline for initial analysis of droplet-based single-cell RNA-seq data
88 stars
15 watching
42 forks
Language: C++
last commit: over 2 years ago
Linked from 1 awesome list
pipelinepreprocessingscrna-seqsingle-cell-rna-seq
Related projects:
Repository | Description | Stars |
---|---|---|
kharchenkolab/numbat | Analyzes single-cell RNA-seq data to detect allele-specific copy number variations and infer lineage relationships in cancer cells | 166 |
pachterlab/kallistobustools | A workflow for pre-processing single-cell RNA-seq data using Kallisto and Bustools. | 115 |
hoohm/dropseqpipe | A pre-processing workflow for SingleCell RNASeq data from raw sequencing data to final count matrix with QC plots. | 147 |
rabadanlab/sctda | An object-oriented Python library for analyzing single-cell RNA-seq data using topological representations | 7 |
nasqar/seuratv3wizard | An R-based web application for guided single-cell RNA-seq data analysis and clustering | 33 |
griffithlab/rnaseq_tutorial | An educational tutorial and working demonstration pipeline for RNA-seq analysis on the cloud | 1,337 |
tallulandrews/m3drop | Software to model and analyze dropout patterns in single-cell RNA sequencing data | 29 |
snakemake-workflows/single-cell-rna-seq | A workflow generator for single-cell RNA-seq data analysis | 97 |
elementolab/sctcrseq | Recovering TCR sequences from single-cell RNA-seq data using a Python pipeline | 26 |
hemberg-lab/scrna.seq.course | An open-source teaching package for the computational analysis of single-cell RNA-seq data using R. | 672 |
yjzhang/uncurl_python | Analyzes single-cell RNA-seq data using statistical models and machine learning algorithms | 15 |
debsin/dropclust | A bioinformatics R package for cluster analysis of single-cell RNA-seq data | 23 |
pachterlab/kb_python | A Python package that provides a unified interface to multiple pre-processing workflows for single-cell RNA-seq data. | 153 |
pachterlab/cwgflhgcchap_2021 | Analyzing multiplexed single-cell RNA-seq data from a marine organism, providing tools for preprocessing, clustering, and analysis of gene expression across different cell types. | 2 |
kenlaulab/dropkick | Automated cell filtering tool for single-cell RNA sequencing data analysis | 24 |