dropClust

RNA clustering tool

A bioinformatics R package for cluster analysis of single-cell RNA-seq data

Version 2.1.0 released

GitHub

23 stars
8 watching
8 forks
Language: R
last commit: about 5 years ago
Linked from 1 awesome list

cluster-analysisclusteringgenomicslsh-forestpcarna-seqsinglecell

Backlinks from these awesome lists:

Related projects:

Repository Description Stars
tallulandrews/m3drop Software to model and analyze dropout patterns in single-cell RNA sequencing data 29
hemberg-lab/sc3 A tool for clustering cells from single cell RNA-Seq experiments 119
kharchenkolab/dropest A software pipeline for analyzing single-cell RNA-seq data from droplet-based experiments 88
imb-computational-genomics-lab/ascend Tools and methods for analyzing single-cell RNA sequencing data, including expression normalization and differential gene expression analysis. 22
marchinilab/dropsim A tool for simulating single-cell RNA sequencing data for research purposes. 5
galadrielbriere/clustomics An open-source software tool for applying consensus clustering to multi-omic data for disease subtyping 5
kieranrcampbell/embeddr Analyzes single-cell RNA-seq data using pseudotemporal ordering and clustering 12
drisso/bioc2016singlecell Analyzing single-cell RNA-seq data using R and Bioconductor tools 77
nbisweden/excelerate-scrnaseq An open-source R package providing tools and methods for analyzing single cell RNA-seq data 216
asmagen/robustsinglecell An R-based software package for analyzing scRNA-seq data to identify robust cell subpopulations and compare population compositions across different tissues and experimental models. 13
ribl/fbannotationclusteringswift A Swift library that aggregates map pins into clusters using a QuadTree data structure 311
pimentel/scca-bc Analyzes data to identify linear relationships and groups them into clusters 2
hms-dbmi/scde Provides statistical methods for analyzing single-cell RNA-seq data, focusing on error modeling and differential expression analysis. 173
kenlaulab/dropkick Automated cell filtering tool for single-cell RNA sequencing data analysis 24
epurdom/clusterexperiment A package providing tools for comparing and analyzing clusterings of single-cell sequencing data 37