dropClust

RNA clustering tool

A bioinformatics R package for cluster analysis of single-cell RNA-seq data

Version 2.1.0 released

GitHub

23 stars
8 watching
8 forks
Language: R
last commit: about 7 years ago
Linked from 1 awesome list

cluster-analysisclusteringgenomicslsh-forestpcarna-seqsinglecell

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