dropsim

RNA simulator

A tool for simulating single-cell RNA sequencing data for research purposes.

R Package for Single Cell RNAseq Synthetic Data Simulation

GitHub

5 stars
2 watching
1 forks
Language: R
last commit: over 6 years ago
Linked from 1 awesome list

r-packagescrnaseqsimulationsingle-cell

Backlinks from these awesome lists:

Related projects:

Repository Description Stars
tallulandrews/m3drop Software to model and analyze dropout patterns in single-cell RNA sequencing data 29
kharchenkolab/dropest A software pipeline for analyzing single-cell RNA-seq data from droplet-based experiments 88
debsin/dropclust A bioinformatics R package for cluster analysis of single-cell RNA-seq data 23
imb-computational-genomics-lab/ascend Tools and methods for analyzing single-cell RNA sequencing data, including expression normalization and differential gene expression analysis. 22
yoseflab/symsim A software tool for simulating variability in single cell RNA sequencing data by incorporating multiple factors 24
nbisweden/workshop-scrnaseq An educational resource offering interactive R, Python, and Seurat labs for analyzing single-cell RNA sequencing data. 195
snakemake-workflows/single-cell-rna-seq A workflow generator for single-cell RNA-seq data analysis 97
hemberg-lab/scrna.seq.course An open-source teaching package for the computational analysis of single-cell RNA-seq data using R. 672
nbisweden/excelerate-scrnaseq An open-source R package providing tools and methods for analyzing single cell RNA-seq data 216
vccri/falco A cloud-based framework for streamlined single-cell RNA-seq data analysis with simplified access to computational and storage resources. 38
nasqar/seuratv3wizard An R-based web application for guided single-cell RNA-seq data analysis and clustering 33
hms-dbmi/scde Provides statistical methods for analyzing single-cell RNA-seq data, focusing on error modeling and differential expression analysis. 173
dtm2451/dittoseq A suite of functions for analyzing and visualizing RNA sequencing data 190
hoohm/dropseqpipe A pre-processing workflow for SingleCell RNASeq data from raw sequencing data to final count matrix with QC plots. 147
lingfeiwang/normalisr A software framework for analyzing single-cell RNA sequencing data 18