M3Drop
dropout modeler
Software to model and analyze dropout patterns in single-cell RNA sequencing data
29 stars
5 watching
9 forks
Language: R
last commit: 9 months ago
Linked from 1 awesome list
human-cell-atlasrna-seqsingle-cellsingle-cell-rna-seq
Related projects:
Repository | Description | Stars |
---|---|---|
marchinilab/dropsim | A tool for simulating single-cell RNA sequencing data for research purposes. | 5 |
debsin/dropclust | A bioinformatics R package for cluster analysis of single-cell RNA-seq data | 23 |
kharchenkolab/dropest | A software pipeline for analyzing single-cell RNA-seq data from droplet-based experiments | 88 |
imb-computational-genomics-lab/ascend | Tools and methods for analyzing single-cell RNA sequencing data, including expression normalization and differential gene expression analysis. | 22 |
kenlaulab/dropkick | Automated cell filtering tool for single-cell RNA sequencing data analysis | 24 |
qile0317/apackoftheclones | Software package to visualize clonal expansion in single-cell immune repertoire data | 14 |
hms-dbmi/scde | Provides statistical methods for analyzing single-cell RNA-seq data, focusing on error modeling and differential expression analysis. | 173 |
miguelvr/dropblock | Regularizes convolutional networks by randomly dropping units in contiguous regions of feature maps | 588 |
hoohm/dropseqpipe | A pre-processing workflow for SingleCell RNASeq data from raw sequencing data to final count matrix with QC plots. | 147 |
snakemake-workflows/single-cell-rna-seq | A workflow generator for single-cell RNA-seq data analysis | 97 |
mohuangx/saver | Recover gene expression profiles from noisy single-cell RNA-seq data using regression and empirical Bayes methods. | 109 |
hemberg-lab/sc3 | A tool for clustering cells from single cell RNA-Seq experiments | 119 |
zjufanlab/sccatch | Automated tool for annotating cell types from single-cell RNA sequencing data based on marker genes | 218 |
rglab/mast | Provides tools and methods for analyzing single-cell RNA sequencing data using statistical models | 228 |
marcelosua/spotlight | Software tool for deconvoluting mixtures of cells from single-cell transcriptomes using non-negative matrix factorization | 163 |