scde
Cell analysis tool
Provides statistical methods for analyzing single-cell RNA-seq data, focusing on error modeling and differential expression analysis.
R package for analyzing single-cell RNA-seq data
173 stars
25 watching
66 forks
Language: R
last commit: 9 months ago
Linked from 1 awesome list
analysisbioinformaticsheterogenityngsrsingle-celltranscriptomics
seandavi/awesome-single-cellRelated projects:
| Repository | Description | Stars |
|---|---|---|
 imb-computational-genomics-lab/ascend | Tools and methods for analyzing single-cell RNA sequencing data, including expression normalization and differential gene expression analysis. | 22 |
 rglab/mast | Provides tools and methods for analyzing single-cell RNA sequencing data using statistical models | 228 |
 snakemake-workflows/single-cell-rna-seq | A workflow generator for single-cell RNA-seq data analysis | 97 |
 scverse/scvi-tools | Probabilistic analysis tools for single-cell omics data | 1,251 |
 nbisweden/excelerate-scrnaseq | An open-source R package providing tools and methods for analyzing single cell RNA-seq data | 216 |
 cellgeni/scrna.seq.course | An educational resource teaching computational analysis of single-cell RNA-seq data using R and Bioconductor tools | 123 |
 kharchenkolab/numbat | Analyzes single-cell RNA-seq data to detect allele-specific copy number variations and infer lineage relationships in cancer cells | 166 |
 scrna-seq/tasc | A toolkit for analyzing single-cell RNA sequencing data using computational methods and algorithms | 2 |
 rabadanlab/sctda | An object-oriented Python library for analyzing single-cell RNA-seq data using topological representations | 7 |
 nasqar/seuratv3wizard | An R-based web application for guided single-cell RNA-seq data analysis and clustering | 33 |
 neurosurgery-brain-tumor-center-diazlab/scell | Software tool for analyzing single-cell RNA-seq data from brain tumor samples. | 38 |
 xmc811/scillus | A package for processing and visualizing single-cell RNA-seq data in R, providing an efficient and customizable framework for analyzing complex biological datasets. | 53 |
 lingfeiwang/normalisr | A software framework for analyzing single-cell RNA sequencing data | 18 |
 kstreet13/bioc2020trajectories | An R package for comparing multiple conditions in single-cell RNA-seq trajectory inference | 25 |
 catavallejos/basics | An integrated Bayesian hierarchical model to analyze single-cell sequencing data | 84 |