TASC

single-cell analyzer

A toolkit for analyzing single-cell RNA sequencing data using computational methods and algorithms

Toolkit for Analysis of Single Cell data

GitHub

2 stars
1 watching
3 forks
Language: C
last commit: over 7 years ago
Linked from 1 awesome list


Backlinks from these awesome lists:

Related projects:

Repository Description Stars
cellgeni/scrna.seq.course An educational resource teaching computational analysis of single-cell RNA-seq data using R and Bioconductor tools 123
nasqar/seuratv3wizard An R-based web application for guided single-cell RNA-seq data analysis and clustering 33
lingfeiwang/normalisr A software framework for analyzing single-cell RNA sequencing data 18
nasqar/seuratwizard A web-based interactive application for guided single-cell RNA-seq data analysis and clustering using Seurat. 13
catavallejos/basics An integrated Bayesian hierarchical model to analyze single-cell sequencing data 84
nbisweden/excelerate-scrnaseq An open-source R package providing tools and methods for analyzing single cell RNA-seq data 216
nbisweden/workshop-scrnaseq An educational resource offering interactive R, Python, and Seurat labs for analyzing single-cell RNA sequencing data. 195
zji90/scate Provides a statistical framework for analyzing genome-wide regulatory landscape in single cells using scATAC-seq data 9
rabadanlab/sctda An object-oriented Python library for analyzing single-cell RNA-seq data using topological representations 7
hemberg-lab/scrna.seq.course An open-source teaching package for the computational analysis of single-cell RNA-seq data using R. 672
snakemake-workflows/single-cell-rna-seq A workflow generator for single-cell RNA-seq data analysis 97
hms-dbmi/scde Provides statistical methods for analyzing single-cell RNA-seq data, focusing on error modeling and differential expression analysis. 173
scverse/scvi-tools Probabilistic analysis tools for single-cell omics data 1,251
kstreet13/bioc2020trajectories An R package for comparing multiple conditions in single-cell RNA-seq trajectory inference 25
sccaf/sccaf Automated method for identifying putative cell types from single-cell RNA-seq data using clustering and machine learning 93