SCATE
Cell activity analyzer
A statistical framework for analyzing single-cell ATAC-seq data to reconstruct cis-regulatory elements' activities
SCATE: Single-cell ATAC-seq Signal Extraction and Enhancement
9 stars
2 watching
1 forks
Language: R
last commit: over 4 years ago
Linked from 1 awesome list
seandavi/awesome-single-cellRelated projects:
| Repository | Description | Stars |
|---|---|---|
| zji90/scrat | A software tool for analyzing single-cell regulome data from ATAC-seq experiments. | 13 |
 tobiasrausch/atacseq | An ATAC-Seq analysis pipeline written in shell script, providing tools for quality control, peak detection, and differential analysis of chromatin accessibility data. | 74 |
 scrna-seq/tasc | A toolkit for analyzing single-cell RNA sequencing data using computational methods and algorithms | 2 |
 jsxlei/scale | A tool for analyzing single-cell ATAC-seq data using neural networks to extract latent features. | 100 |
 lingfeiwang/normalisr | A software framework for analyzing single-cell RNA sequencing data | 18 |
 catavallejos/basics | An integrated Bayesian hierarchical model to analyze single-cell sequencing data | 84 |
 jhu99/scbean | Analyzes single-cell multi-omics data from various modalities like RNA-seq and ATAC-seq | 16 |
 rabadanlab/sctda | An object-oriented Python library for analyzing single-cell RNA-seq data using topological representations | 7 |
 zjufanlab/sccatch | Automated tool for annotating cell types from single-cell RNA sequencing data based on marker genes | 219 |
 scverse/scvi-tools | Probabilistic analysis tools for single-cell omics data | 1,270 |
 kirstlab/asc_seurat | An R-based web application for scRNA-seq analysis that provides a user-friendly interface for data preprocessing, visualization, and annotation. | 23 |
 nvidia-genomics-research/atacworks | A toolkit for preprocessing and analyzing high-throughput DNA sequencing data from ATAC-seq experiments using deep learning techniques. | 128 |
 nasqar/seuratv3wizard | An R-based web application for guided single-cell RNA-seq data analysis and clustering | 33 |
| zji90/tscan | Software tool for analyzing single-cell RNA-seq data | 37 |
| nasqar/seuratwizard | A web-based interactive application for guided single-cell RNA-seq data analysis and clustering using Seurat. | 13 |