SCALE

ATAC analysis tool

A tool for analyzing single-cell ATAC-seq data using neural networks to extract latent features.

Single-cell ATAC-seq analysis via Latent feature Extraction

GitHub

100 stars
6 watching
19 forks
Language: Python
last commit: about 3 years ago
Linked from 1 awesome list


Backlinks from these awesome lists:

Related projects:

RepositoryDescriptionStars
nvidia-genomics-research/atacworksA toolkit for preprocessing and analyzing high-throughput DNA sequencing data from ATAC-seq experiments using deep learning techniques.128
zji90/scateA statistical framework for analyzing single-cell ATAC-seq data to reconstruct cis-regulatory elements' activities9
jhu99/scbeanAnalyzes single-cell multi-omics data from various modalities like RNA-seq and ATAC-seq16
leosmigel/analyzingalphaAnalyzes and processes Alpha data to extract insights481
scrna-seq/tascA toolkit for analyzing single-cell RNA sequencing data using computational methods and algorithms2
tobiasrausch/atacseqAn ATAC-Seq analysis pipeline written in shell script, providing tools for quality control, peak detection, and differential analysis of chromatin accessibility data.74
jonathanlilly/jlabA MATLAB toolbox designed for big data analysis and signal processing with applications in oceanography.112
scverse/scvi-toolsProbabilistic analysis tools for single-cell omics data1,270
rabadanlab/sctdaAn object-oriented Python library for analyzing single-cell RNA-seq data using topological representations7
jamesjcai/scgeatoolboxA toolset for analyzing single-cell gene expression data from RNA sequencing experiments.24
yjzhang/uncurl_pythonAnalyzes single-cell RNA-seq data using statistical models and machine learning algorithms15
tanaylab/metacellAn R package that facilitates analysis of single-cell RNA-seq data by identifying homogeneous groups of cells.110
dtm2451/dittoseqA suite of functions for analyzing and visualizing RNA sequencing data191
jsxlei/scalexA tool for integrating single-cell data from heterogeneous sources into a common cell-space using deep learning techniques.73
xampprocky/tokeiA tool for displaying statistics about codebase size and language distribution11,463