SCALE

ATAC analysis tool

A tool for analyzing single-cell ATAC-seq data using neural networks to extract latent features.

Single-cell ATAC-seq analysis via Latent feature Extraction

GitHub

100 stars
6 watching
19 forks
Language: Python
last commit: over 1 year ago
Linked from 1 awesome list


Backlinks from these awesome lists:

Related projects:

Repository Description Stars
nvidia-genomics-research/atacworks A toolkit for preprocessing and analyzing high-throughput DNA sequencing data from ATAC-seq experiments using deep learning techniques. 128
zji90/scate A statistical framework for analyzing single-cell ATAC-seq data to reconstruct cis-regulatory elements' activities 9
jhu99/scbean Analyzes single-cell multi-omics data from various modalities like RNA-seq and ATAC-seq 16
leosmigel/analyzingalpha Analyzes and processes Alpha data to extract insights 481
scrna-seq/tasc A toolkit for analyzing single-cell RNA sequencing data using computational methods and algorithms 2
tobiasrausch/atacseq An ATAC-Seq analysis pipeline written in shell script, providing tools for quality control, peak detection, and differential analysis of chromatin accessibility data. 74
jonathanlilly/jlab A MATLAB toolbox designed for big data analysis and signal processing with applications in oceanography. 112
scverse/scvi-tools Probabilistic analysis tools for single-cell omics data 1,270
rabadanlab/sctda An object-oriented Python library for analyzing single-cell RNA-seq data using topological representations 7
jamesjcai/scgeatoolbox A toolset for analyzing single-cell gene expression data from RNA sequencing experiments. 24
yjzhang/uncurl_python Analyzes single-cell RNA-seq data using statistical models and machine learning algorithms 15
tanaylab/metacell An R package that facilitates analysis of single-cell RNA-seq data by identifying homogeneous groups of cells. 110
dtm2451/dittoseq A suite of functions for analyzing and visualizing RNA sequencing data 191
jsxlei/scalex A tool for integrating single-cell data from heterogeneous sources into a common cell-space using deep learning techniques. 73
xampprocky/tokei A tool for displaying statistics about codebase size and language distribution 11,463