scbean

Multi-omics analyzer

Analyzes single-cell multi-omics data from various modalities like RNA-seq and ATAC-seq

Single-cell data analysis

GitHub

16 stars
4 watching
4 forks
Language: Python
last commit: about 2 years ago
Linked from 1 awesome list

dimensionality-reductionintegrationsingle-cell

Backlinks from these awesome lists:

Related projects:

RepositoryDescriptionStars
scverse/scvi-toolsProbabilistic analysis tools for single-cell omics data1,270
scverse/muonA Python framework for multimodal omics analysis of high-throughput biological data222
iosonofabio/singletAnalyzes single cell RNA sequence data with quantitative phenotypes13
rabadanlab/sctdaAn object-oriented Python library for analyzing single-cell RNA-seq data using topological representations7
kstreet13/bioc2020trajectoriesAnalyzing and comparing single-cell RNA-seq data across multiple conditions to infer cell trajectories and detect differential expression.25
jamesjcai/scgeatoolboxA toolset for analyzing single-cell gene expression data from RNA sequencing experiments.24
zjufanlab/sccatchAutomated tool for annotating cell types from single-cell RNA sequencing data based on marker genes219
euxhenh/cellarAn interactive software tool for analyzing single-cell omics data32
yjzhang/uncurl_pythonAnalyzes single-cell RNA-seq data using statistical models and machine learning algorithms15
imb-computational-genomics-lab/ascendTools and methods for analyzing single-cell RNA sequencing data, including expression normalization and differential gene expression analysis.22
snakemake-workflows/single-cell-rna-seqA workflow generator for single-cell RNA-seq data analysis100
hmatsu1226/scoupA probabilistic model to analyze single-cell expression data during differentiation9
hms-dbmi/scdeProvides statistical methods for analyzing single-cell RNA-seq data, focusing on error modeling and differential expression analysis.173
lingfeiwang/normalisrA software framework for analyzing single-cell RNA sequencing data18
zji90/scateA statistical framework for analyzing single-cell ATAC-seq data to reconstruct cis-regulatory elements' activities9