scbean
Multi-omics analyzer
Analyzes single-cell multi-omics data from various modalities like RNA-seq and ATAC-seq
Single-cell data analysis
16 stars
4 watching
4 forks
Language: Python
last commit: 2 months ago
Linked from 1 awesome list
dimensionality-reductionintegrationsingle-cell
seandavi/awesome-single-cellRelated projects:
| Repository | Description | Stars |
|---|---|---|
 scverse/scvi-tools | Probabilistic analysis tools for single-cell omics data | 1,251 |
| scverse/muon | A Python framework for multimodal omics analysis of high-throughput biological data | 218 |
 iosonofabio/singlet | Analyzes single cell RNA sequence data with quantitative phenotypes | 13 |
 rabadanlab/sctda | An object-oriented Python library for analyzing single-cell RNA-seq data using topological representations | 7 |
 kstreet13/bioc2020trajectories | An R package for comparing multiple conditions in single-cell RNA-seq trajectory inference | 25 |
 jamesjcai/scgeatoolbox | A toolset for analyzing single-cell gene expression data from RNA sequencing experiments. | 24 |
 zjufanlab/sccatch | Automated tool for annotating cell types from single-cell RNA sequencing data based on marker genes | 218 |
 euxhenh/cellar | An interactive software tool for analyzing single-cell omics data | 31 |
 yjzhang/uncurl_python | Analyzes single-cell RNA-seq data using statistical models and machine learning algorithms | 15 |
 imb-computational-genomics-lab/ascend | Tools and methods for analyzing single-cell RNA sequencing data, including expression normalization and differential gene expression analysis. | 22 |
 snakemake-workflows/single-cell-rna-seq | A workflow generator for single-cell RNA-seq data analysis | 97 |
 hmatsu1226/scoup | A probabilistic model to analyze single-cell expression data during differentiation | 9 |
 hms-dbmi/scde | Provides statistical methods for analyzing single-cell RNA-seq data, focusing on error modeling and differential expression analysis. | 173 |
 lingfeiwang/normalisr | A software framework for analyzing single-cell RNA sequencing data | 18 |
 zji90/scate | Provides a statistical framework for analyzing genome-wide regulatory landscape in single cells using scATAC-seq data | 9 |