muon

Multi-omics analyzer

A Python framework for multimodal omics analysis of high-throughput biological data

muon is a multimodal omics Python framework

GitHub

218 stars
14 watching
31 forks
Language: Python
last commit: 22 days ago
Linked from 1 awesome list

anndatacite-seqmudatamulti-omicsmultimodal-datamultimodal-omics-analysismuonscanpyscatac-seqscrna-seqscverse

Backlinks from these awesome lists:

Related projects:

Repository Description Stars
jhu99/scbean Analyzes single-cell multi-omics data from various modalities like RNA-seq and ATAC-seq 16
scverse/scanpy A Python toolkit for analyzing large-scale single-cell gene expression data 1,919
scverse/scvi-tools Probabilistic analysis tools for single-cell omics data 1,251
flo-compbio/monet An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces 39
txwang/mogonet A framework for multi-omics data integration and classification using graph convolutional networks 143
subho406/omninet An implementation of a unified architecture for multi-modal multi-task learning using PyTorch. 512
shamir-lab/nemo An implementation of a multi-omics clustering algorithm that integrates data from different omics types into a cohesive clustering framework 15
biofam/mofa A factor analysis model that integrates multi-omics data sets to identify underlying cellular states or disease subgroups. 235
scverse/squidpy A Python library for analyzing and visualizing spatial molecular data from single-cell genomics and tissue images 440
lkremer/scbs A command-line tool for analyzing single-cell DNA methylation data 11
mhlee0903/multi_channels_pinn Investigating neural networks for drug discovery using multiple chemical descriptors. 3
scverse/scirpy Analyzes single-cell TCR and BCR data from scRNA-seq using Python 220
mhh-rcug/nf_wochenende A tool for analyzing metagenomic data by aligning short or long reads against a reference sequence and generating reports on bacterial growth and abundance 13
epurdom/cobolt Analyzes and integrates multimodal single-cell sequencing data from different modalities 18
helenalc/muscat Analyzes multi-sample scRNA-seq data to identify differential states between cell subpopulations and experimental conditions. 163