muon
Multi-omics analyzer
A Python framework for multimodal omics analysis of high-throughput biological data
muon is a multimodal omics Python framework
222 stars
14 watching
31 forks
Language: Python
last commit: 2 months ago
Linked from 1 awesome list
anndatacite-seqmudatamulti-omicsmultimodal-datamultimodal-omics-analysismuonscanpyscatac-seqscrna-seqscverse
mikelove/awesome-multi-omicsRelated projects:
| Repository | Description | Stars |
|---|---|---|
 jhu99/scbean | Analyzes single-cell multi-omics data from various modalities like RNA-seq and ATAC-seq | 16 |
| scverse/scanpy | A Python toolkit for analyzing large-scale single-cell gene expression data | 1,954 |
| scverse/scvi-tools | Probabilistic analysis tools for single-cell omics data | 1,270 |
 flo-compbio/monet | An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces | 39 |
 txwang/mogonet | A framework for multi-omics data integration and classification using graph convolutional networks | 144 |
 subho406/omninet | An implementation of a unified architecture for multi-modal multi-task learning using PyTorch. | 515 |
 shamir-lab/nemo | An implementation of a multi-omics clustering algorithm that integrates data from different omics types into a cohesive clustering framework | 15 |
 biofam/mofa | A factor analysis model that integrates multi-omics data sets to identify underlying cellular states or disease subgroups. | 233 |
| scverse/squidpy | A Python library for analyzing and visualizing spatial molecular data from single-cell genomics and tissue images | 447 |
 lkremer/scbs | A command-line tool for analyzing single-cell DNA methylation data | 11 |
 mhlee0903/multi_channels_pinn | Investigating neural networks for drug discovery using multiple chemical descriptors. | 3 |
| scverse/scirpy | Analyzes single-cell TCR and BCR data from scRNA-seq using Python | 222 |
 mhh-rcug/nf_wochenende | A tool for analyzing metagenomic data by aligning short or long reads against a reference sequence and generating reports on bacterial growth and abundance | 13 |
 epurdom/cobolt | Analyzes and integrates multimodal single-cell sequencing data from different modalities | 19 |
 helenalc/muscat | Analyzes multi-sample scRNA-seq data to identify differential states between cell subpopulations and experimental conditions. | 171 |