scbs
Methylation analysis tool
A command-line tool for analyzing single-cell DNA methylation data
Python package with CLI for the analysis of single cell methylation data. Now known as MethSCAn: https://github.com/anders-biostat/MethSCAn
11 stars
4 watching
6 forks
Language: Python
last commit: over 2 years agoLinked from 1 awesome list
seandavi/awesome-single-cellRelated projects:
| Repository | Description | Stars |
|---|---|---|
 andreaskapou/melissa | A software framework for analyzing single-cell DNA methylation data using Bayesian methods | 14 |
 colomemaria/episcanpy | A toolkit for analyzing single-cell epigenomics data from open chromatin and DNA methylation experiments. | 141 |
 markburns/mecab | A Ruby gem providing a C++ implementation of the Japanese morphological analyzer MeCab. | 30 |
 ldmt-muri/kin-morph-fst | An analysis tool for breaking down words into their component parts in the Kinyarwanda language | 6 |
 mhh-rcug/nf_wochenende | A tool for analyzing metagenomic data by aligning short or long reads against a reference sequence and generating reports on bacterial growth and abundance | 13 |
 jhu99/scbean | Analyzes single-cell multi-omics data from various modalities like RNA-seq and ATAC-seq | 16 |
 cangermueller/deepcpg | A deep learning framework for predicting DNA methylation states from incomplete data. | 143 |
 scverse/muon | A Python framework for multimodal omics analysis of high-throughput biological data | 222 |
 chrisquince/desman | Software for analyzing genetic data from environmental samples to infer the presence of specific strains | 69 |
 kharchenkolab/numbat | Analyzes single-cell RNA-seq data to detect allele-specific copy number variations and infer lineage relationships in cancer cells | 171 |
 hms-dbmi/scde | Provides statistical methods for analyzing single-cell RNA-seq data, focusing on error modeling and differential expression analysis. | 173 |
 bodenmillergroup/histocat | An interactive analysis toolbox for multiplexed image cytometry data | 1 |
 imb-computational-genomics-lab/ascend | Tools and methods for analyzing single-cell RNA sequencing data, including expression normalization and differential gene expression analysis. | 22 |
 srvcodes/mt-dma | An implementation of a multi-task deep morphological analyzer with neural models and post-processing tools for natural language processing tasks. | 1 |
| scverse/scanpy | A Python toolkit for analyzing large-scale single-cell gene expression data | 1,954 |