numbat
Cell analysis tool
Analyzes single-cell RNA-seq data to detect allele-specific copy number variations and infer lineage relationships in cancer cells
Haplotype-aware CNV analysis from single-cell RNA-seq
166 stars
9 watching
23 forks
Language: R
last commit: 2 months ago
Linked from 1 awesome list
cancer-genomicscnv-detectionlineage-tracingphylogenysingle-cellsingle-cell-analysissingle-cell-rna-seqspatial-transcriptomics
Related projects:
Repository | Description | Stars |
---|---|---|
kharchenkolab/dropest | A software pipeline for analyzing single-cell RNA-seq data from droplet-based experiments | 88 |
nasqar/seuratv3wizard | An R-based web application for guided single-cell RNA-seq data analysis and clustering | 33 |
zjufanlab/sccatch | Automated tool for annotating cell types from single-cell RNA sequencing data based on marker genes | 218 |
pachterlab/cwgflhgcchap_2021 | Analyzing multiplexed single-cell RNA-seq data from a marine organism, providing tools for preprocessing, clustering, and analysis of gene expression across different cell types. | 2 |
scverse/scvi-tools | Probabilistic analysis tools for single-cell omics data | 1,251 |
hms-dbmi/scde | Provides statistical methods for analyzing single-cell RNA-seq data, focusing on error modeling and differential expression analysis. | 173 |
imb-computational-genomics-lab/ascend | Tools and methods for analyzing single-cell RNA sequencing data, including expression normalization and differential gene expression analysis. | 22 |
neurosurgery-brain-tumor-center-diazlab/scell | Software tool for analyzing single-cell RNA-seq data from brain tumor samples. | 38 |
ucarlab/iasva | An R package that identifies hidden factors in data to uncover sources of variation | 8 |
kstreet13/bioc2020trajectories | An R package for comparing multiple conditions in single-cell RNA-seq trajectory inference | 25 |
rabadanlab/sctda | An object-oriented Python library for analyzing single-cell RNA-seq data using topological representations | 7 |
dtm2451/dittoseq | A suite of functions for analyzing and visualizing RNA sequencing data | 190 |
nasqar/seuratwizard | A web-based interactive application for guided single-cell RNA-seq data analysis and clustering using Seurat. | 13 |
rglab/mast | Provides tools and methods for analyzing single-cell RNA sequencing data using statistical models | 228 |
cellgeni/scrna.seq.course | An educational resource teaching computational analysis of single-cell RNA-seq data using R and Bioconductor tools | 123 |