iasva
Variation analyzer
An R package that identifies hidden factors in data to uncover sources of variation
Iteratively Adjusted Surrogate Variable Analysis
8 stars
8 watching
1 forks
Language: R
last commit: over 3 years ago
Linked from 1 awesome list
heterogeneityheuristic-algorithmrsingle-cellsingle-cell-rna-seqtranscriptomics
Related projects:
Repository | Description | Stars |
---|---|---|
kharchenkolab/numbat | Analyzes single-cell RNA-seq data to detect allele-specific copy number variations and infer lineage relationships in cancer cells | 166 |
nasqar/seuratv3wizard | An R-based web application for guided single-cell RNA-seq data analysis and clustering | 33 |
snakemake-workflows/single-cell-rna-seq | A workflow generator for single-cell RNA-seq data analysis | 97 |
rabadanlab/sctda | An object-oriented Python library for analyzing single-cell RNA-seq data using topological representations | 7 |
nlawlor/v-sva | An interactive R application to detect and annotate hidden sources of variation in single cell RNA-seq data | 7 |
scverse/scvi-tools | Probabilistic analysis tools for single-cell omics data | 1,251 |
klarman-cell-observatory/scsva | Software package for interactive analysis and visualization of large single-cell omics datasets | 25 |
zjufanlab/sccatch | Automated tool for annotating cell types from single-cell RNA sequencing data based on marker genes | 218 |
hms-dbmi/scde | Provides statistical methods for analyzing single-cell RNA-seq data, focusing on error modeling and differential expression analysis. | 173 |
imb-computational-genomics-lab/ascend | Tools and methods for analyzing single-cell RNA sequencing data, including expression normalization and differential gene expression analysis. | 22 |
kharchenkolab/dropest | A software pipeline for analyzing single-cell RNA-seq data from droplet-based experiments | 88 |
rglab/mast | Provides tools and methods for analyzing single-cell RNA sequencing data using statistical models | 228 |
catavallejos/basics | An integrated Bayesian hierarchical model to analyze single-cell sequencing data | 84 |
yjzhang/uncurl_python | Analyzes single-cell RNA-seq data using statistical models and machine learning algorithms | 15 |
theislab/single-cell-tutorial | Provides a comprehensive tutorial and workflow for single-cell RNA-seq analysis | 1,395 |