iasva

Variation analyzer

An R package that identifies hidden factors in data to uncover sources of variation

Iteratively Adjusted Surrogate Variable Analysis

GitHub

8 stars
8 watching
1 forks
Language: R
last commit: over 3 years ago
Linked from 1 awesome list

heterogeneityheuristic-algorithmrsingle-cellsingle-cell-rna-seqtranscriptomics

Backlinks from these awesome lists:

Related projects:

Repository Description Stars
kharchenkolab/numbat Analyzes single-cell RNA-seq data to detect allele-specific copy number variations and infer lineage relationships in cancer cells 166
nasqar/seuratv3wizard An R-based web application for guided single-cell RNA-seq data analysis and clustering 33
snakemake-workflows/single-cell-rna-seq A workflow generator for single-cell RNA-seq data analysis 97
rabadanlab/sctda An object-oriented Python library for analyzing single-cell RNA-seq data using topological representations 7
nlawlor/v-sva An interactive R application to detect and annotate hidden sources of variation in single cell RNA-seq data 7
scverse/scvi-tools Probabilistic analysis tools for single-cell omics data 1,251
klarman-cell-observatory/scsva Software package for interactive analysis and visualization of large single-cell omics datasets 25
zjufanlab/sccatch Automated tool for annotating cell types from single-cell RNA sequencing data based on marker genes 218
hms-dbmi/scde Provides statistical methods for analyzing single-cell RNA-seq data, focusing on error modeling and differential expression analysis. 173
imb-computational-genomics-lab/ascend Tools and methods for analyzing single-cell RNA sequencing data, including expression normalization and differential gene expression analysis. 22
kharchenkolab/dropest A software pipeline for analyzing single-cell RNA-seq data from droplet-based experiments 88
rglab/mast Provides tools and methods for analyzing single-cell RNA sequencing data using statistical models 228
catavallejos/basics An integrated Bayesian hierarchical model to analyze single-cell sequencing data 84
yjzhang/uncurl_python Analyzes single-cell RNA-seq data using statistical models and machine learning algorithms 15
theislab/single-cell-tutorial Provides a comprehensive tutorial and workflow for single-cell RNA-seq analysis 1,395