BASiCS
scRNA-seq analyzer
An integrated Bayesian hierarchical model to analyze single-cell sequencing data
BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/packages/BASiCS/ for the official release version
84 stars
7 watching
17 forks
Language: R
last commit: 6 months ago
Linked from 1 awesome list
bayesianbioconductor-packagegene-expressionrrcpprcpparmadilloscrna-seqsingle-cell
seandavi/awesome-single-cellRelated projects:
| Repository | Description | Stars |
|---|---|---|
 lingfeiwang/normalisr | A software framework for analyzing single-cell RNA sequencing data | 18 |
 scverse/scvi-tools | Probabilistic analysis tools for single-cell omics data | 1,251 |
 scrna-seq/tasc | A toolkit for analyzing single-cell RNA sequencing data using computational methods and algorithms | 2 |
 nbisweden/workshop-scrnaseq | An educational resource offering interactive R, Python, and Seurat labs for analyzing single-cell RNA sequencing data. | 195 |
 rabadanlab/sctda | An object-oriented Python library for analyzing single-cell RNA-seq data using topological representations | 7 |
 cellgeni/scrna.seq.course | An educational resource teaching computational analysis of single-cell RNA-seq data using R and Bioconductor tools | 123 |
 imb-computational-genomics-lab/ascend | Tools and methods for analyzing single-cell RNA sequencing data, including expression normalization and differential gene expression analysis. | 22 |
 single-cell-genetics/cardelino | An R package for identifying clonal structures from single-cell RNA sequencing data using Bayesian methods. | 59 |
 nasqar/seuratv3wizard | An R-based web application for guided single-cell RNA-seq data analysis and clustering | 33 |
 hemberg-lab/scrna.seq.course | An open-source teaching package for the computational analysis of single-cell RNA-seq data using R. | 672 |
 nghiavtr/bpsc | A package for analyzing single-cell RNA-seq data using a beta-Poisson model. | 16 |
 jamesjcai/scgeatoolbox | A toolset for analyzing single-cell gene expression data from RNA sequencing experiments. | 24 |
 kstreet13/bioc2020trajectories | An R package for comparing multiple conditions in single-cell RNA-seq trajectory inference | 25 |
 bioinformatics-core-shared-training/univcambridge_scrnaseq_nov2021 | An educational resource providing an introduction to single-cell RNA-seq analysis with interactive tutorials and resources. | 3 |
| nbisweden/excelerate-scrnaseq | An open-source R package providing tools and methods for analyzing single cell RNA-seq data | 216 |