cardelino
clonal analyzer
An R package for identifying clonal structures from single-cell RNA sequencing data using Bayesian methods.
Clone identification from single-cell data
59 stars
7 watching
12 forks
Language: R
last commit: over 2 years ago
Linked from 1 awesome list
clonal-clusteringgibbs-samplingscrna-seqsingle-cellsomatic-mutations
mikelove/awesome-multi-omicsRelated projects:
| Repository | Description | Stars |
|---|---|---|
 qile0317/apackoftheclones | Tools for visualizing and analyzing clonal expansion in immune cell populations | 14 |
 antoniodefalco/scevan | Automated tool for classifying cells in scRNA data and inferring copy number profiles of malignant cells. | 94 |
 cbg-ethz/scicone | A software tool for analyzing single-cell DNA sequencing data to reconstruct copy number events and cell histories in cancer research. | 20 |
 catavallejos/basics | An integrated Bayesian hierarchical model to analyze single-cell sequencing data | 84 |
 xmc811/scillus | A package for processing and visualizing single-cell RNA-seq data in R, providing an efficient and customizable framework for analyzing complex biological datasets. | 60 |
 kieranrcampbell/clonealign | A software package that uses Bayesian inference to assign gene expression estimates from single-cell RNA-seq and DNA-seq data to specific cancer clones. | 32 |
 cabsel/calista | Analyzes single cell expression data to infer cellular lineages and clustering structures | 9 |
 imb-computational-genomics-lab/ascend | Tools and methods for analyzing single-cell RNA sequencing data, including expression normalization and differential gene expression analysis. | 22 |
 kharchenkolab/numbat | Analyzes single-cell RNA-seq data to detect allele-specific copy number variations and infer lineage relationships in cancer cells | 171 |
 drisso/bioc2016singlecell | Analyzing single-cell RNA-seq data using R and Bioconductor tools | 76 |
 zjufanlab/sccatch | Automated tool for annotating cell types from single-cell RNA sequencing data based on marker genes | 219 |
 cantinilab/scprint | An open-source software framework for analyzing single-cell RNA sequencing data and predicting gene networks | 35 |
 cahanlab/singlecellnet | A package for classifying single-cell RNA-Seq data across species and platforms | 131 |
 rglab/mast | Provides tools and methods for analyzing single-cell RNA sequencing data using statistical models | 228 |
 cortes-ciriano-lab/scomatic | A tool for detecting somatic variants in single-cell data | 177 |