CALISTA
Cell lineage analysis tool
Analyzes single cell expression data to infer cellular lineages and clustering structures
CALISTA: Clustering And Lineage Inference in Single Cell Transcriptional Analysis
9 stars
5 watching
2 forks
Language: HTML
last commit: over 7 years agoLinked from 1 awesome list
network-analysissingle-cell-analysis
seandavi/awesome-single-cellRelated projects:
| Repository | Description | Stars |
|---|---|---|
 single-cell-genetics/cardelino | An R package for identifying clonal structures from single-cell RNA sequencing data using Bayesian methods. | 59 |
| cabsel/sincerities | Infers gene regulatory networks from time-stamped single cell transcriptional expression profiles using a statistical method | 12 |
 kchen-lab/medalt | Software for inferring evolutionary lineage of tumor cells from single cell copy number profiles | 17 |
 chenmengjie/citrus | A toolkit for single cell sequencing analysis with methods for normalization and clustering of RNA sequencing data. | 3 |
 kharchenkolab/numbat | Analyzes single-cell RNA-seq data to detect allele-specific copy number variations and infer lineage relationships in cancer cells | 171 |
 catavallejos/basics | An integrated Bayesian hierarchical model to analyze single-cell sequencing data | 84 |
 cantinilab/scprint | An open-source software framework for analyzing single-cell RNA sequencing data and predicting gene networks | 35 |
 scialdonelab/comunet | An exploratory tool for analyzing intercellular communication from single-cell transcriptional data. | 12 |
 cbg-ethz/scicone | A software tool for analyzing single-cell DNA sequencing data to reconstruct copy number events and cell histories in cancer research. | 20 |
 scverse/scvi-tools | Probabilistic analysis tools for single-cell omics data | 1,270 |
 sccaf/sccaf | Automated method for identifying putative cell types from single-cell RNA-seq data using clustering and machine learning | 94 |
 euxhenh/cellar | An interactive software tool for analyzing single-cell omics data | 32 |
 compbel/scifil | A computational tool for analyzing single cell sequencing data to infer fitness landscapes of cancer cell populations. | 5 |
 antoniodefalco/scevan | Automated tool for classifying cells in scRNA data and inferring copy number profiles of malignant cells. | 94 |
 ggiecold/eclair | An algorithmic framework for inferring cell lineages from gene expression data through multiple rounds of downsampling and clustering, followed by consensus clustering and graph construction. | 1 |