Citrus
SCS toolkit
A toolkit for single cell sequencing analysis with methods for normalization and clustering of RNA sequencing data.
3 stars
3 watching
1 forks
Language: C++
last commit: almost 5 years ago
Linked from 1 awesome list
seandavi/awesome-single-cellRelated projects:
| Repository | Description | Stars |
|---|---|---|
 cabsel/calista | Analyzes single cell expression data to infer cellular lineages and clustering structures | 9 |
 cbg-ethz/scicone | A software tool for analyzing single-cell DNA sequencing data to reconstruct copy number events and cell histories in cancer research. | 20 |
 robertaboukhalil/ginkgo | An analysis tool for single-cell copy-number variation data from sequencing experiments. | 47 |
 cellgeni/scrna.seq.course | An educational resource teaching computational analysis of single-cell RNA-seq data using R and Bioconductor tools | 125 |
 nccgroup/house | A toolkit for analyzing and monitoring runtime mobile applications | 1,400 |
 zhangxiangxiao/crepe | A toolkit for building character-level convolutional networks for text classification using Torch 7. | 848 |
 kharchenkolab/numbat | Analyzes single-cell RNA-seq data to detect allele-specific copy number variations and infer lineage relationships in cancer cells | 171 |
 zjufanlab/sccatch | Automated tool for annotating cell types from single-cell RNA sequencing data based on marker genes | 219 |
 compbel/scifil | A computational tool for analyzing single cell sequencing data to infer fitness landscapes of cancer cell populations. | 5 |
 cantinilab/scprint | An open-source software framework for analyzing single-cell RNA sequencing data and predicting gene networks | 35 |
 meta-toolkit/meta | A comprehensive C++ toolkit for text analysis and retrieval | 698 |
 angelolab/ark-analysis | A toolset for analyzing multiplexed imaging data by applying various machine learning and image processing techniques to segment cells, cluster pixels, and perform spatial analysis. | 78 |
 tanaylab/metacell | An R package that facilitates analysis of single-cell RNA-seq data by identifying homogeneous groups of cells. | 110 |
 scialdonelab/comunet | An exploratory tool for analyzing intercellular communication from single-cell transcriptional data. | 12 |
 single-cell-genetics/cardelino | An R package for identifying clonal structures from single-cell RNA sequencing data using Bayesian methods. | 59 |