SCICoNE

Single-cell analyzer

A software tool for analyzing single-cell DNA sequencing data to reconstruct copy number events and cell histories in cancer research.

Single-cell copy number calling and event history reconstruction.

GitHub

20 stars
8 watching
7 forks
Language: C++
last commit: about 2 years ago
Linked from 1 awesome list

bayesian-inferencecancer-genomicscopy-number-variationmcmcsingle-cell

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