ascend

Cell analysis software

Tools and methods for analyzing single-cell RNA sequencing data, including expression normalization and differential gene expression analysis.

R package - Analysis of Single Cell Expression, Normalisation and Differential expression (ascend)

GitHub

22 stars
6 watching
7 forks
Language: R
last commit: about 5 years ago
Linked from 1 awesome list

rrpackagesscrna-seq-analysisscrnaseqsinglecell

Backlinks from these awesome lists:

Related projects:

Repository Description Stars
immcore/is-cellr A web-based Shiny application for analyzing single-cell RNA sequencing data 23
hms-dbmi/scde Provides statistical methods for analyzing single-cell RNA-seq data, focusing on error modeling and differential expression analysis. 173
rglab/mast Provides tools and methods for analyzing single-cell RNA sequencing data using statistical models 228
lingfeiwang/normalisr A software framework for analyzing single-cell RNA sequencing data 18
xmc811/scillus A package for processing and visualizing single-cell RNA-seq data in R, providing an efficient and customizable framework for analyzing complex biological datasets. 53
nbisweden/excelerate-scrnaseq An open-source R package providing tools and methods for analyzing single cell RNA-seq data 216
nbisweden/workshop-scrnaseq An educational resource offering interactive R, Python, and Seurat labs for analyzing single-cell RNA sequencing data. 195
catavallejos/basics An integrated Bayesian hierarchical model to analyze single-cell sequencing data 84
nasqar/seuratv3wizard An R-based web application for guided single-cell RNA-seq data analysis and clustering 33
cellgeni/scrna.seq.course An educational resource teaching computational analysis of single-cell RNA-seq data using R and Bioconductor tools 123
kharchenkolab/numbat Analyzes single-cell RNA-seq data to detect allele-specific copy number variations and infer lineage relationships in cancer cells 166
hemberg-lab/scrna.seq.course An open-source teaching package for the computational analysis of single-cell RNA-seq data using R. 672
asncd/mimosca A tool for designing and analyzing pooled single cell RNA-seq perturbation experiments to understand biological dynamics 85
drisso/bioc2016singlecell Analyzing single-cell RNA-seq data using R and Bioconductor tools 77
snakemake-workflows/single-cell-rna-seq A workflow generator for single-cell RNA-seq data analysis 97