iS-CellR
Analysis tool
A web-based Shiny application for analyzing single-cell RNA sequencing data
iS-CellR: interactive graphical tool for analysis of single-cell RNAseq data
23 stars
6 watching
6 forks
Language: R
last commit: about 5 years ago
Linked from 1 awesome list
seandavi/awesome-single-cellRelated projects:
| Repository | Description | Stars |
|---|---|---|
 imb-computational-genomics-lab/ascend | Tools and methods for analyzing single-cell RNA sequencing data, including expression normalization and differential gene expression analysis. | 22 |
 nasqar/seuratv3wizard | An R-based web application for guided single-cell RNA-seq data analysis and clustering | 33 |
 kieranrcampbell/embeddr | Analyzes single-cell RNA-seq data using pseudotemporal ordering and clustering | 12 |
 martaint/intercellar | An interactive R/Shiny app for analyzing cell-cell communication from single-cell transcriptomics data | 9 |
 hms-dbmi/scde | Provides statistical methods for analyzing single-cell RNA-seq data, focusing on error modeling and differential expression analysis. | 173 |
 zjufanlab/sccatch | Automated tool for annotating cell types from single-cell RNA sequencing data based on marker genes | 218 |
 hemberg-lab/sc3 | A tool for clustering cells from single cell RNA-Seq experiments | 119 |
 nbisweden/excelerate-scrnaseq | An open-source R package providing tools and methods for analyzing single cell RNA-seq data | 216 |
 drisso/bioc2016singlecell | Analyzing single-cell RNA-seq data using R and Bioconductor tools | 77 |
 snakemake-workflows/single-cell-rna-seq | A workflow generator for single-cell RNA-seq data analysis | 97 |
 cytomining/cytominer | Software for preprocessing and analyzing large cell profiling datasets | 49 |
 eiriniar/cellcnn | A Python-based software framework for analyzing mass/flow cytometry data to identify phenotype-associated cell subsets. | 65 |
| nasqar/seuratwizard | A web-based interactive application for guided single-cell RNA-seq data analysis and clustering using Seurat. | 13 |
 wycwycpku/rscore | Tools and utilities for single-cell RNA-seq data analysis with network features | 25 |
 rglab/mast | Provides tools and methods for analyzing single-cell RNA sequencing data using statistical models | 228 |