cytominer

Profiler

Software for preprocessing and analyzing large cell profiling datasets

Methods for Image-Based Cell Profiling

GitHub

49 stars
7 watching
28 forks
Language: R
last commit: 7 months ago
Linked from 1 awesome list

microscopyprofilingr

Backlinks from these awesome lists:

Related projects:

Repository Description Stars
cytomining/pycytominer A Python package for processing high-dimensional data from microscopy imaging experiments 82
cytomining/cytominer-database A package for organizing and storing morphological profiling data from microscopy images. 10
cellprofiler/cellprofiler-analyst A tool for exploring and analyzing large biological image sets to identify complex phenotypes 148
cellprofiler/cellprofiler A software application that automates the analysis of biological images for quantitative measurement of phenotypes 928
markrobinsonuzh/cytofworkflow A pipeline for differential analysis of high-throughput cytometry data 14
menchelab/bioprofiling.jl A Julia toolkit for analyzing high-dimensional cellular profiles 13
immcore/is-cellr A web-based Shiny application for analyzing single-cell RNA sequencing data 23
eiriniar/cellcnn A Python-based software framework for analyzing mass/flow cytometry data to identify phenotype-associated cell subsets. 65
computational-cell-analytics/micro-sam Tools for interactive microscopy image segmentation and tracking 372
celldynamics/quimp Software for analyzing cell shape changes and dynamic distributions of fluorescent reporters at the cell membrane. 7
sentinal4d/cellshape Analyzes 3D cell shape features using deep learning for cancer research 21
martaint/intercellar An interactive R/Shiny app for analyzing cell-cell communication from single-cell transcriptomics data 9
bodenmillergroup/histocat An interactive analysis toolbox for multiplexed image cytometry data 1
schmollerlab/cell_acdc A Python framework for analyzing and annotating microscopy data 138
jonasmr/microprofile A profiling tool for C++ applications 1,472