QuimP
Cell tracking software
Software for analyzing cell shape changes and dynamic distributions of fluorescent reporters at the cell membrane.
QuimP is software for tracking cellular shape changes and dynamic distributions of fluorescent reporters at the cell membrane.
7 stars
5 watching
1 forks
Language: Java
last commit: almost 3 years agoLinked from 1 awesome list
cellimagejmotilitysegmentation
hallvaaw/awesome-biological-image-analysisRelated projects:
| Repository | Description | Stars |
|---|---|---|
 cytomining/cytominer | Software for preprocessing and analyzing large cell profiling datasets | 49 |
 royerlab/ultrack | A software framework for robust cell tracking in 2D, 3D, and multichannel images with uncertain segmentation | 98 |
 jhsmit/colicoords | A platform for analyzing fluorescence microscopy data from rodlike cells. | 26 |
 sentinal4d/cellshape | Analyzes 3D cell shape features using deep learning for cancer research | 21 |
 computational-cell-analytics/micro-sam | Tools for interactive microscopy image segmentation and tracking | 372 |
 oist/usiigaci | Automated cell tracking in phase contrast microscopy images using machine learning and computer vision techniques | 193 |
 quantixed/cellmigration | An analysis tool for studying cell migration in 2D images using manual tracking and computational methods. | 7 |
 cbib/dypfish | A Python library for statistical analysis of mRNA and protein distributions in single cell confocal images | 2 |
 bodenmillergroup/histocat | An interactive analysis toolbox for multiplexed image cytometry data | 1 |
 vanvalenlab/cellsam | A Python library providing inference code for a foundation model of cell segmentation using PyTorch. | 58 |
 eiriniar/cellcnn | A Python-based software framework for analyzing mass/flow cytometry data to identify phenotype-associated cell subsets. | 65 |
| cytomining/pycytominer | A Python package for processing high-dimensional data from microscopy imaging experiments | 82 |
| cytomining/cytominer-database | A package for organizing and storing morphological profiling data from microscopy images. | 10 |
 kchen-lab/medalt | Software for inferring evolutionary lineage of tumor cells from single cell copy number profiles | 17 |
 omicsml/cellplm | An open-source pre-trained language model for analyzing cell types from single-cell data | 69 |