QuimP

Cell tracking software

Software for analyzing cell shape changes and dynamic distributions of fluorescent reporters at the cell membrane.

QuimP is software for tracking cellular shape changes and dynamic distributions of fluorescent reporters at the cell membrane.

GitHub

7 stars
5 watching
1 forks
Language: Java
last commit: about 1 year ago
Linked from 1 awesome list

cellimagejmotilitysegmentation

Backlinks from these awesome lists:

Related projects:

Repository Description Stars
cytomining/cytominer Software for preprocessing and analyzing large cell profiling datasets 49
royerlab/ultrack A software framework for robust cell tracking in 2D, 3D, and multichannel images with uncertain segmentation 98
jhsmit/colicoords A platform for analyzing fluorescence microscopy data from rodlike cells. 26
sentinal4d/cellshape Analyzes 3D cell shape features using deep learning for cancer research 21
computational-cell-analytics/micro-sam Tools for interactive microscopy image segmentation and tracking 372
oist/usiigaci Automated cell tracking in phase contrast microscopy images using machine learning and computer vision techniques 193
quantixed/cellmigration An analysis tool for studying cell migration in 2D images using manual tracking and computational methods. 7
cbib/dypfish A Python library for statistical analysis of mRNA and protein distributions in single cell confocal images 2
bodenmillergroup/histocat An interactive analysis toolbox for multiplexed image cytometry data 1
vanvalenlab/cellsam A Python library providing inference code for a foundation model of cell segmentation using PyTorch. 58
eiriniar/cellcnn A Python-based software framework for analyzing mass/flow cytometry data to identify phenotype-associated cell subsets. 65
cytomining/pycytominer A Python package for processing high-dimensional data from microscopy imaging experiments 82
cytomining/cytominer-database A package for organizing and storing morphological profiling data from microscopy images. 10
kchen-lab/medalt Software for inferring evolutionary lineage of tumor cells from single cell copy number profiles 17
omicsml/cellplm An open-source pre-trained language model for analyzing cell types from single-cell data 69