ultrack

Cell tracker

A software framework for robust cell tracking in 2D, 3D, and multichannel images with uncertain segmentation

Cell tracking and segmentation software

GitHub

98 stars
6 watching
13 forks
Language: Python
last commit: almost 2 years ago
Linked from 1 awesome list

cell-segmentationcell-trackingcell-tracking-challengegurobi

Backlinks from these awesome lists:

Related projects:

RepositoryDescriptionStars
celldynamics/quimpSoftware for analyzing cell shape changes and dynamic distributions of fluorescent reporters at the cell membrane.7
oist/usiigaciAutomated cell tracking in phase contrast microscopy images using machine learning and computer vision techniques193
computational-cell-analytics/micro-samTools for interactive microscopy image segmentation and tracking372
navinlabcode/celltrekA toolkit for mapping single cells to spatial coordinates in tissue sections based on scRNA-seq and ST data109
cytomining/cytominerSoftware for preprocessing and analyzing large cell profiling datasets49
brainglobe/cellfinderAutomated 3D cell detection tool for large images in microscopy and neuroscience research181
mouseland/cellposeA software framework for cell segmentation in microscopy images with human-in-the-loop capabilities and image restoration1,415
cellprofiler/cellprofiler-analystA tool for exploring and analyzing large biological image sets to identify complex phenotypes148
evrytania/lte-cell-scannerSoftware tool to locate and track LTE basestation cells using low-performance RF front ends.584
quantixed/cellmigrationAn analysis tool for studying cell migration in 2D images using manual tracking and computational methods.7
vision4robotics/autotrackA Matlab implementation of an adaptive visual tracking algorithm for UAVs with automatic spatio-temporal regularization96
birdlifeinternational/track2kbaA package to analyze tracking data and identify areas of importance for biodiversity conservation.11
bfabiszewski/ulogger-serverA web application for real-time geolocation tracking and management.552
vision4robotics/arcf-trackerThis MATLAB implementation provides a robust and accurate tracker for real-time object tracking in aerial videos54
kreshuklab/plant-segA tool for cell instance aware segmentation in densely packed 3D volumetric images101