ultrack
Cell tracker
A software framework for robust cell tracking in 2D, 3D, and multichannel images with uncertain segmentation
Cell tracking and segmentation software
98 stars
6 watching
13 forks
Language: Python
last commit: about 1 month ago
Linked from 1 awesome list
cell-segmentationcell-trackingcell-tracking-challengegurobi
hallvaaw/awesome-biological-image-analysisRelated projects:
| Repository | Description | Stars |
|---|---|---|
 celldynamics/quimp | Software for analyzing cell shape changes and dynamic distributions of fluorescent reporters at the cell membrane. | 7 |
 oist/usiigaci | Automated cell tracking in phase contrast microscopy images using machine learning and computer vision techniques | 193 |
 computational-cell-analytics/micro-sam | Tools for interactive microscopy image segmentation and tracking | 372 |
 navinlabcode/celltrek | A toolkit for mapping single cells to spatial coordinates in tissue sections based on scRNA-seq and ST data | 109 |
 cytomining/cytominer | Software for preprocessing and analyzing large cell profiling datasets | 49 |
 brainglobe/cellfinder | Automated 3D cell detection tool for large images in microscopy and neuroscience research | 181 |
 mouseland/cellpose | A software framework for cell segmentation in microscopy images with human-in-the-loop capabilities and image restoration | 1,415 |
 cellprofiler/cellprofiler-analyst | A tool for exploring and analyzing large biological image sets to identify complex phenotypes | 148 |
 evrytania/lte-cell-scanner | Software tool to locate and track LTE basestation cells using low-performance RF front ends. | 584 |
 quantixed/cellmigration | An analysis tool for studying cell migration in 2D images using manual tracking and computational methods. | 7 |
 vision4robotics/autotrack | A Matlab implementation of an adaptive visual tracking algorithm for UAVs with automatic spatio-temporal regularization | 96 |
 birdlifeinternational/track2kba | A package to analyze tracking data and identify areas of importance for biodiversity conservation. | 11 |
 bfabiszewski/ulogger-server | A web application for real-time geolocation tracking and management. | 552 |
| vision4robotics/arcf-tracker | This MATLAB implementation provides a robust and accurate tracker for real-time object tracking in aerial videos | 54 |
 kreshuklab/plant-seg | A tool for cell instance aware segmentation in densely packed 3D volumetric images | 101 |