ultrack

Cell tracker

A software framework for robust cell tracking in 2D, 3D, and multichannel images with uncertain segmentation

Cell tracking and segmentation software

GitHub

94 stars
6 watching
12 forks
Language: Python
last commit: 8 days ago
Linked from 1 awesome list

cell-segmentationcell-trackingcell-tracking-challengegurobi

Backlinks from these awesome lists:

Related projects:

Repository Description Stars
celldynamics/quimp Software for analyzing cellular shape changes and fluorescent reporter distributions in real-time 7
oist/usiigaci Automated cell tracking in phase contrast microscopy images using machine learning and computer vision techniques 193
computational-cell-analytics/micro-sam A tool for interactive microscopy image segmentation and tracking. 365
navinlabcode/celltrek A toolkit for mapping single cells to spatial coordinates in tissue sections based on scRNA-seq and ST data 108
cytomining/cytominer Software for preprocessing and analyzing large cell profiling datasets 49
brainglobe/cellfinder Automated 3D cell detection tool for large images in microscopy and neuroscience research 181
mouseland/cellpose A software framework for cell segmentation in microscopy images with human-in-the-loop capabilities and image restoration 1,385
cellprofiler/cellprofiler-analyst A tool for exploring and analyzing large biological image sets to identify complex phenotypes 146
evrytania/lte-cell-scanner A collection of tools to locate and track cellular base station cells with low-performance RF front ends 584
quantixed/cellmigration An analysis tool for studying cell migration in 2D images using manual tracking and computational methods. 7
vision4robotics/autotrack A Matlab implementation of an automatic visual tracking system with spatio-temporal regularization for UAVs 96
birdlifeinternational/track2kba A package to analyze tracking data and identify areas of importance for biodiversity conservation. 11
bfabiszewski/ulogger-server A web application for real-time geolocation tracking and management. 547
vision4robotics/arcf-tracker An open-source implementation of a real-time object tracking algorithm for drones. 54
kreshuklab/plant-seg A tool for cell instance aware segmentation in densely packed 3D volumetric images 97