cellpose
Cell segmentation tool
A software framework for cell segmentation in microscopy images with human-in-the-loop capabilities and image restoration
a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
1k stars
29 watching
400 forks
Language: Jupyter Notebook
last commit: 22 days ago
Linked from 1 awesome list
cell-biologycell-segmentationsegmentation
Related projects:
Repository | Description | Stars |
---|---|---|
computational-cell-analytics/micro-sam | A tool for interactive microscopy image segmentation and tracking. | 365 |
cellprofiler/cellprofiler-analyst | A tool for exploring and analyzing large biological image sets to identify complex phenotypes | 146 |
dcjones/proseg | An open-source software package for probabilistic cell segmentation in spatial transcriptomics | 45 |
vanvalenlab/cellsam | A Python library providing inference code for a foundation model of cell segmentation using PyTorch. | 53 |
zjufanlab/sccatch | Automated tool for annotating cell types from single-cell RNA sequencing data based on marker genes | 218 |
cytomining/cytominer | Software for preprocessing and analyzing large cell profiling datasets | 49 |
zjufanlab/scdeepsort | A tool for accurately annotating cell types in single-cell RNA sequencing data using deep learning | 99 |
brainglobe/cellfinder | Automated 3D cell detection tool for large images in microscopy and neuroscience research | 181 |
oist/usiigaci | Automated cell tracking in phase contrast microscopy images using machine learning and computer vision techniques | 193 |
schmollerlab/cell_acdc | A Python framework for analyzing and annotating microscopy data | 133 |
kreshuklab/plant-seg | A tool for cell instance aware segmentation in densely packed 3D volumetric images | 97 |
rahi-lab/yeaz-gui | An interactive tool for segmenting yeast cells using deep learning-based image analysis | 27 |
jhsmit/colicoords | An open-source Python project for analyzing fluorescence microscopy data from rodlike cells. | 26 |
sentinal4d/cellshape | Analyzes 3D cell shape features using deep learning for cancer research | 21 |
mahmoodlab/maps | A machine learning framework for annotating cell types from spatial proteomics data | 48 |