YeaZ-GUI

Yeast cell segmentation tool

An interactive tool for segmenting yeast cells using deep learning-based image analysis

An interactive tool for segmenting yeast cells using deep learning.

GitHub

27 stars
1 watching
14 forks
Language: Python
last commit: 9 months ago
Linked from 1 awesome list


Backlinks from these awesome lists:

Related projects:

Repository Description Stars
kreshuklab/plant-seg A tool for cell instance aware segmentation in densely packed 3D volumetric images 97
angelolab/ark-analysis A toolset for analyzing multiplexed imaging data by applying various machine learning and image processing techniques to segment cells, cluster pixels, and perform spatial analysis. 76
yoseflab/fastproject Provides tools and methods for visualizing and analyzing single cell RNA-seq data in low dimensions 35
mouseland/cellpose A software framework for cell segmentation in microscopy images with human-in-the-loop capabilities and image restoration 1,385
computational-cell-analytics/micro-sam A tool for interactive microscopy image segmentation and tracking. 365
saezlab/liana An R-based framework to analyze cell-cell communication from single-cell RNA-Seq data by integrating multiple methods and resources 182
sentinal4d/cellshape Analyzes 3D cell shape features using deep learning for cancer research 21
dcjones/proseg An open-source software package for probabilistic cell segmentation in spatial transcriptomics 45
mstorath/pottslab A toolbox for unsupervised multilabel image segmentation using the Potts model. 109
euxhenh/cellar An interactive software tool for analyzing single-cell omics data 31
tanaylab/metacell An R package that facilitates analysis of single-cell RNA-seq data by identifying homogeneous groups of cells. 108
zjufanlab/scdeepsort A tool for accurately annotating cell types in single-cell RNA sequencing data using deep learning 99
yoseflab/trapes Algorithmic software for analyzing single-cell RNA sequencing data to reconstruct T cell receptor sequences. 14
rabadanlab/sctda An object-oriented Python library for analyzing single-cell RNA-seq data using topological representations 7
martaint/intercellar An interactive R/Shiny app for analyzing cell-cell communication from single-cell transcriptomics data 9