micro-sam
Segmentor
Tools for interactive microscopy image segmentation and tracking
Segment Anything for Microscopy
372 stars
7 watching
46 forks
Language: Jupyter Notebook
last commit: 4 months ago
Linked from 1 awesome list
cell-segmentationmicroscopy-imagesmitochondria-segmentationnaparinuclei-segmentationsegment-anythingsegmentation
Related projects:
Repository | Description | Stars |
---|---|---|
| A software framework for cell segmentation in microscopy images with human-in-the-loop capabilities and image restoration | 1,415 |
| A Python framework for analyzing and annotating microscopy data | 138 |
| Software for preprocessing and analyzing large cell profiling datasets | 49 |
| A PyTorch-based package for analyzing microscopy data with machine learning algorithms | 197 |
| A tool for cell instance aware segmentation in densely packed 3D volumetric images | 101 |
| An analysis platform for super-resolution microscopy data | 66 |
| An application suite for light microscopy acquisition, data storage, visualization, and analysis | 85 |
| Software for analyzing cell shape changes and dynamic distributions of fluorescent reporters at the cell membrane. | 7 |
| A toolbox for analyzing microscopy images of cells labeled with single-molecule fluorescent in situ hybridization (smFISH) tags. | 58 |
| Generates high-quality synthetic images of bacterial cells to aid machine learning-based image segmentation algorithms. | 19 |
| A tool for segmenting biological images | 30 |
| An interactive image processing tool for analyzing biological microscopy images | 22 |
| A Python package for processing high-dimensional data from microscopy imaging experiments | 82 |
| A software framework for robust cell tracking in 2D, 3D, and multichannel images with uncertain segmentation | 98 |
| An interactive tool for segmenting yeast cells using deep learning-based image analysis | 27 |