atomai

Microscopy analyzer

A PyTorch-based package for analyzing microscopy data with machine learning algorithms

Deep and Machine Learning for Microscopy

GitHub

197 stars
11 watching
41 forks
Language: Python
last commit: 5 months ago
Linked from 1 awesome list

deep-kernel-learningdeep-learningelectron-microscopyensemble-learningfully-convolutional-networksgoogle-colaboratoryimagingjupyter-notebookmachine-learningmaterialsmaterials-sciencemicroscopymultivariate-analysispytorchscanning-probe-microscopysemantic-segmentationvariational-autoencoders

Backlinks from these awesome lists:

Related projects:

Repository Description Stars
python-microscopy/python-microscopy An application suite for light microscopy acquisition, data storage, visualization, and analysis. 84
allencellmodeling/aicsimageio Provides Python tools for reading, writing and managing microscopy images 206
kaiyangzhou/dassl.pytorch A PyTorch toolbox for supporting research and development of domain adaptation, generalization, and semi-supervised learning methods in computer vision. 1,227
cytomining/pycytominer A Python package for processing high-dimensional data from microscopy imaging experiments 81
jries/smap A toolbox for analyzing super-resolution microscopy data from single-molecule localization microscopy (SMLM) images. 65
flika-org/flika An interactive image processing tool for analyzing biological microscopy images 22
schmollerlab/cell_acdc A Python framework for analyzing and annotating microscopy data 134
truskovskiyk/nima.pytorch Assesses and evaluates images using deep learning models 335
vrrenske/bactmap A package for analyzing and visualizing microscopy data, integrating segmentation tools with Rstats and ggplot2. 4
zeiss-microscopy/oad Automates microscopy workflows using Python and AI tools to simplify and customize image acquisition, analysis, and processing. 127
priyavrat-misra/xrays-and-gradcam This project uses deep learning to analyze chest radiographs and diagnose COVID-19. 49
felixgwu/img_classification_pk_pytorch A PyTorch project for comparing image classification models and facilitating quick experiment setup 366
ayoolaolafenwa/pixellib A deep learning library for image segmentation and object detection using PyTorch. 1,052
david-hoffman/pyotf Software for simulating optical transfer functions in microscopy using Python 71
zhanghang1989/pytorch-encoding A Python framework for building deep learning models with optimized encoding layers and batch normalization. 2,043