BactMAP
Microscopy analyzer
A package for analyzing and visualizing microscopy data, integrating segmentation tools with Rstats and ggplot2.
gateway for segmentation data to Rstats & visualization with ggplot2 - in development
4 stars
1 watching
4 forks
Language: R
last commit: almost 3 years agoLinked from 1 awesome list
fluorescence-dataggplotvisualization
hallvaaw/awesome-biological-image-analysisRelated projects:
| Repository | Description | Stars |
|---|---|---|
 pycroscopy/atomai | A PyTorch-based package for analyzing microscopy data with machine learning algorithms | 197 |
 flika-org/flika | An interactive image processing tool for analyzing biological microscopy images | 22 |
 jries/smap | An analysis platform for super-resolution microscopy data | 66 |
 rraadd88/htsimaging | A Python package for analyzing high-throughput single-cell imaging data | 5 |
 srvcodes/mt-dma | An implementation of a multi-task deep morphological analyzer with neural models and post-processing tools for natural language processing tasks. | 1 |
 priyavrat-misra/xrays-and-gradcam | This project uses deep learning to analyze chest radiographs and diagnose COVID-19. | 50 |
 schmollerlab/cell_acdc | A Python framework for analyzing and annotating microscopy data | 138 |
 ericpante/marmap | A tool for analyzing and visualizing bathymetric and topographic data using R. | 32 |
 rglab/mast | Provides tools and methods for analyzing single-cell RNA sequencing data using statistical models | 228 |
 fish-quant/big-fish | A toolbox for analyzing microscopy images of cells labeled with single-molecule fluorescent in situ hybridization (smFISH) tags. | 58 |
 jhsmit/colicoords | A platform for analyzing fluorescence microscopy data from rodlike cells. | 26 |
 bactopia/bactopia | An automated pipeline for analyzing bacterial genomes using a flexible workflow | 423 |
 bricenocenti/ggfacto | Tools for visualizing correspondence analysis results | 2 |
 cytomining/cytominer | Software for preprocessing and analyzing large cell profiling datasets | 49 |
 dtm2451/dittoseq | A suite of functions for analyzing and visualizing RNA sequencing data | 191 |