pycytominer

Image profiler

A Python package for processing high-dimensional data from microscopy imaging experiments

Python package for processing image-based profiling data

GitHub

80 stars
6 watching
36 forks
Language: Python
last commit: 17 days ago
Linked from 2 awesome lists

carpenter-labcellprofilercytominerimage-processingmicroscopymorphological-profilingpythonway-lab

Backlinks from these awesome lists:

Related projects:

Repository Description Stars
cytomining/cytominer Software for preprocessing and analyzing large cell profiling datasets 49
cytomining/cytominer-database A package for organizing and storing morphological profiling data from microscopy images. 10
cellprofiler/cellprofiler-analyst A tool for exploring and analyzing large biological image sets to identify complex phenotypes 146
cellprofiler/cellprofiler A software application that automates the analysis of biological images for quantitative measurement of phenotypes 923
pycroscopy/atomai A PyTorch-based package for analyzing microscopy data with machine learning algorithms 194
schmollerlab/cell_acdc A Python framework for analyzing and annotating microscopy data 133
allencellmodeling/aicsimageio Provides Python tools for reading, writing and managing microscopy images 206
slicer/slicer A multi-platform software package for visualization and image analysis in medicine and scientific research 1,723
python-microscopy/python-microscopy A software suite for light microscopy image acquisition, analysis, and visualization 84
david-hoffman/pyotf Software for simulating optical transfer functions in microscopy using Python 71
flika-org/flika An interactive image processing tool for analyzing biological microscopy images 22
rraadd88/htsimaging A Python package for analyzing high-throughput single-cell imaging data 5
menchelab/bioprofiling.jl A Julia toolkit for analyzing high-dimensional cellular profiles 13
cbib/dypfish A Python library for statistical analysis of mRNA and protein distributions in single cell confocal images 2
felixgwu/img_classification_pk_pytorch A PyTorch project for comparing image classification models and facilitating quick experiment setup 365