CellProfiler-Analyst
Image Analysis Tool
A tool for exploring and analyzing large biological image sets to identify complex phenotypes
Open-source software for exploring and analyzing large, high-dimensional image-derived data.
146 stars
21 watching
72 forks
Language: Python
last commit: 3 months ago
Linked from 1 awesome list
cellprofilercellprofiler-analystimage-analysismachine-learning
hallvaaw/awesome-biological-image-analysisRelated projects:
| Repository | Description | Stars |
|---|---|---|
| cellprofiler/cellprofiler | A software application that automates the analysis of biological images for quantitative measurement of phenotypes | 923 |
 cytomining/cytominer | Software for preprocessing and analyzing large cell profiling datasets | 49 |
| cytomining/pycytominer | A Python package for processing high-dimensional data from microscopy imaging experiments | 80 |
 menchelab/bioprofiling.jl | A Julia toolkit for analyzing high-dimensional cellular profiles | 13 |
 petersenpeter/cellexplorer | A tool for analyzing single-cell data from extracellular recordings | 96 |
 rraadd88/htsimaging | A Python package for analyzing high-throughput single-cell imaging data | 5 |
 angelolab/ark-analysis | A toolset for analyzing multiplexed imaging data by applying various machine learning and image processing techniques to segment cells, cluster pixels, and perform spatial analysis. | 76 |
 brainglobe/cellfinder | Automated 3D cell detection tool for large images in microscopy and neuroscience research | 181 |
 eiriniar/cellcnn | A Python-based software framework for analyzing mass/flow cytometry data to identify phenotype-associated cell subsets. | 65 |
 mouseland/cellpose | A software framework for cell segmentation in microscopy images with human-in-the-loop capabilities and image restoration | 1,385 |
 sentinal4d/cellshape | Analyzes 3D cell shape features using deep learning for cancer research | 21 |
 omicsml/cellplm | An open-source pre-trained language model for analyzing cell types from single-cell data | 67 |
 compbel/scifil | A computational tool for analyzing single cell sequencing data to infer fitness landscapes of cancer cell populations. | 5 |
 cbib/dypfish | A Python library for statistical analysis of mRNA and protein distributions in single cell confocal images | 2 |
 abe404/root_painter | An open-source tool for training deep learning models for image analysis | 58 |