FastProject
Data visualization tool
Provides tools and methods for visualizing and analyzing single cell RNA-seq data in low dimensions
Dimensionality reduction for single cell RNA-seq data
35 stars
8 watching
10 forks
Language: Python
last commit: over 6 years agoLinked from 1 awesome list
seandavi/awesome-single-cellRelated projects:
| Repository | Description | Stars |
|---|---|---|
| yoseflab/scone | Tools for quality control and normalization of single-cell RNA-seq data | 53 |
| yoseflab/trapes | Algorithmic software for analyzing single-cell RNA sequencing data to reconstruct T cell receptor sequences. | 14 |
 yuifu/millefy | Visualizes read coverage of single-cell RNA-seq datasets in genomic contexts to highlight cell-to-cell heterogeneity | 28 |
 yulab-smu/ggsc | A package for visualizing single cell and spatial transcriptomics data using R | 43 |
 aertslab/scope | A tool for fast visualization of large-scale single-cell data | 68 |
 dtm2451/dittoseq | A suite of functions for analyzing and visualizing RNA sequencing data | 191 |
| yoseflab/symsim | A software tool for simulating variability in single cell RNA sequencing data by incorporating multiple factors | 24 |
 theislab/single-cell-tutorial | Provides a comprehensive tutorial and workflow for single-cell RNA-seq analysis | 1,419 |
 krishnaswamylab/phate | A tool for visualizing high-dimensional biological data using a novel dimensionality reduction method | 480 |
 yanwu2014/swne | A method and library for visualizing high-dimensional biological datasets using dimensionality reduction techniques. | 105 |
 janosh/pymatviz | A toolkit for visualizing data in materials science and informatics | 177 |
 jhsmit/colicoords | A platform for analyzing fluorescence microscopy data from rodlike cells. | 26 |
 rabadanlab/sctda | An object-oriented Python library for analyzing single-cell RNA-seq data using topological representations | 7 |
 yjzhang/uncurl_python | Analyzes single-cell RNA-seq data using statistical models and machine learning algorithms | 15 |
 rajewsky-lab/novosparc | Software tool to predict spatial locations of single cells in tissue using single-cell RNA sequencing data | 126 |