scone

Data processor

Tools for quality control and normalization of single-cell RNA-seq data

GitHub

53 stars
36 watching
12 forks
Language: R
last commit: about 1 month ago
Linked from 1 awesome list


Backlinks from these awesome lists:

Related projects:

Repository Description Stars
yoseflab/fastproject Provides tools and methods for visualizing and analyzing single cell RNA-seq data in low dimensions 35
yoseflab/trapes Algorithmic software for analyzing single-cell RNA sequencing data to reconstruct T cell receptor sequences. 14
wycwycpku/rscore Tools and utilities for single-cell RNA-seq data analysis with network features 25
rabadanlab/sctda An object-oriented Python library for analyzing single-cell RNA-seq data using topological representations 7
drisso/bioc2016singlecell Analyzing single-cell RNA-seq data using R and Bioconductor tools 77
catavallejos/basics An integrated Bayesian hierarchical model to analyze single-cell sequencing data 84
zjufanlab/sccatch Automated tool for annotating cell types from single-cell RNA sequencing data based on marker genes 218
nbisweden/excelerate-scrnaseq An open-source R package providing tools and methods for analyzing single cell RNA-seq data 216
snakemake-workflows/single-cell-rna-seq A workflow generator for single-cell RNA-seq data analysis 97
nasqar/seuratv3wizard An R-based web application for guided single-cell RNA-seq data analysis and clustering 33
yoseflab/symsim A software tool for simulating variability in single cell RNA sequencing data by incorporating multiple factors 24
yunshun/singlecellworkshop An educational workshop on single-cell RNA-seq analysis using the Seurat R package 0
vccri/falco A cloud-based framework for streamlined single-cell RNA-seq data analysis with simplified access to computational and storage resources. 38
theislab/single-cell-tutorial Provides a comprehensive tutorial and workflow for single-cell RNA-seq analysis 1,395
yjzhang/uncurl_python Analyzes single-cell RNA-seq data using statistical models and machine learning algorithms 15