bioc2016singlecell

Cell analysis software

Analyzing single-cell RNA-seq data using R and Bioconductor tools

Bioconductor workshop: Analysis of single-cell RNA-seq data with R and Bioconductor

GitHub

76 stars
8 watching
20 forks
last commit: almost 10 years ago
Linked from 1 awesome list


Backlinks from these awesome lists:

Related projects:

RepositoryDescriptionStars
kstreet13/bioc2020trajectoriesAnalyzing and comparing single-cell RNA-seq data across multiple conditions to infer cell trajectories and detect differential expression.25
vibscc/daliTool for integrated analysis of single-cell RNAseq data and immune receptor profiling data20
xmc811/scillusA package for processing and visualizing single-cell RNA-seq data in R, providing an efficient and customizable framework for analyzing complex biological datasets.60
imb-computational-genomics-lab/ascendTools and methods for analyzing single-cell RNA sequencing data, including expression normalization and differential gene expression analysis.22
yunshun/singlecellworkshopAn educational workshop on single-cell RNA-seq analysis using the Seurat R package0
iosonofabio/singletAnalyzes single cell RNA sequence data with quantitative phenotypes13
nasqar/seuratv3wizardAn R-based web application for guided single-cell RNA-seq data analysis and clustering33
wycwycpku/rscoreTools and utilities for single-cell RNA-seq data analysis with network features25
zjufanlab/sccatchAutomated tool for annotating cell types from single-cell RNA sequencing data based on marker genes219
nghiavtr/bpscA package for analyzing single-cell RNA-seq data using a beta-Poisson model.16
rglab/mastProvides tools and methods for analyzing single-cell RNA sequencing data using statistical models228
biocorecrg/allele_specific_rnaseqA workflow for analyzing allele-specific RNA-seq data using Nextflow and various bioinformatics tools10
nbisweden/workshop-scrnaseqAn educational resource offering interactive R, Python, and Seurat labs for analyzing single-cell RNA sequencing data.199
hemberg-lab/sc3A tool for clustering cells from single cell RNA-Seq experiments121
martaint/intercellarAn interactive R/Shiny app for analyzing cell-cell communication from single-cell transcriptomics data9