SC3

Cell clusterer

A tool for clustering cells from single cell RNA-Seq experiments

A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments

GitHub

119 stars
11 watching
55 forks
Language: R
last commit: over 3 years ago
Linked from 1 awesome list

bioconductor-packagehuman-cell-atlassingle-cell-rna-seq

Backlinks from these awesome lists:

Related projects:

Repository Description Stars
hemberg-lab/scrna.seq.course An open-source teaching package for the computational analysis of single-cell RNA-seq data using R. 672
nasqar/seuratv3wizard An R-based web application for guided single-cell RNA-seq data analysis and clustering 33
asmagen/robustsinglecell An R-based software package for analyzing scRNA-seq data to identify robust cell subpopulations and compare population compositions across different tissues and experimental models. 13
zjufanlab/sccatch Automated tool for annotating cell types from single-cell RNA sequencing data based on marker genes 218
kieranrcampbell/embeddr Analyzes single-cell RNA-seq data using pseudotemporal ordering and clustering 12
debsin/dropclust A bioinformatics R package for cluster analysis of single-cell RNA-seq data 23
drisso/bioc2016singlecell Analyzing single-cell RNA-seq data using R and Bioconductor tools 77
tanaylab/metacell An R package that facilitates analysis of single-cell RNA-seq data by identifying homogeneous groups of cells. 108
immcore/is-cellr A web-based Shiny application for analyzing single-cell RNA sequencing data 23
sccaf/sccaf Automated method for identifying putative cell types from single-cell RNA-seq data using clustering and machine learning 93
kchen-lab/scmarker An R package for identifying marker genes from single cell RNA sequencing data by applying statistical filters to select cell-type-specific gene markers 15
hms-dbmi/scde Provides statistical methods for analyzing single-cell RNA-seq data, focusing on error modeling and differential expression analysis. 173
scrna-seq/tasc A toolkit for analyzing single-cell RNA sequencing data using computational methods and algorithms 2
imb-computational-genomics-lab/ascend Tools and methods for analyzing single-cell RNA sequencing data, including expression normalization and differential gene expression analysis. 22
gao-lab/cell_blast An open-source tool for querying and annotating large-scale single-cell RNA-seq data using similarity searches. 86