Cell_BLAST

Query engine

An open-source tool for querying and annotating large-scale single-cell RNA-seq data using similarity searches.

A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.

GitHub

86 stars
7 watching
13 forks
Language: Python
last commit: 4 months ago
Linked from 1 awesome list

bioinformaticsdeep-learningsingle-cellsingle-cell-rna-seq

Backlinks from these awesome lists:

Related projects:

Repository Description Stars
zjufanlab/sccatch Automated tool for annotating cell types from single-cell RNA sequencing data based on marker genes 218
pachterlab/cwgflhgcchap_2021 Analyzing multiplexed single-cell RNA-seq data from a marine organism, providing tools for preprocessing, clustering, and analysis of gene expression across different cell types. 2
yjzhang/uncurl_python Analyzes single-cell RNA-seq data using statistical models and machine learning algorithms 15
nasqar/seuratv3wizard An R-based web application for guided single-cell RNA-seq data analysis and clustering 33
rglab/mast Provides tools and methods for analyzing single-cell RNA sequencing data using statistical models 228
cellgeni/scrna.seq.course An educational resource teaching computational analysis of single-cell RNA-seq data using R and Bioconductor tools 123
rabadanlab/sctda An object-oriented Python library for analyzing single-cell RNA-seq data using topological representations 7
hms-dbmi/scde Provides statistical methods for analyzing single-cell RNA-seq data, focusing on error modeling and differential expression analysis. 173
kharchenkolab/numbat Analyzes single-cell RNA-seq data to detect allele-specific copy number variations and infer lineage relationships in cancer cells 166
snakemake-workflows/single-cell-rna-seq A workflow generator for single-cell RNA-seq data analysis 97
kharchenkolab/dropest A software pipeline for analyzing single-cell RNA-seq data from droplet-based experiments 88
hemberg-lab/sc3 A tool for clustering cells from single cell RNA-Seq experiments 119
nasqar/seuratwizard A web-based interactive application for guided single-cell RNA-seq data analysis and clustering using Seurat. 13
nbisweden/workshop-scrnaseq An educational resource offering interactive R, Python, and Seurat labs for analyzing single-cell RNA sequencing data. 195
scverse/scvi-tools Probabilistic analysis tools for single-cell omics data 1,251