robustSingleCell

Cell clustering tool

An R-based software package for analyzing scRNA-seq data to identify robust cell subpopulations and compare population compositions across different tissues and experimental models.

Robust single cell clustering and comparison of population compositions across tissues and experimental models via similarity analysis.

GitHub

13 stars
4 watching
2 forks
Language: R
last commit: about 3 years ago
Linked from 1 awesome list

clusteringdata-integrationscrnaseqsingle-cell-genomicssingle-cell-rna-seq

Backlinks from these awesome lists:

Related projects:

RepositoryDescriptionStars
tanaylab/metacellAn R package that facilitates analysis of single-cell RNA-seq data by identifying homogeneous groups of cells.110
hemberg-lab/sc3A tool for clustering cells from single cell RNA-Seq experiments121
antoniodefalco/scevanAutomated tool for classifying cells in scRNA data and inferring copy number profiles of malignant cells.94
imb-computational-genomics-lab/ascendTools and methods for analyzing single-cell RNA sequencing data, including expression normalization and differential gene expression analysis.22
nasqar/seuratv3wizardAn R-based web application for guided single-cell RNA-seq data analysis and clustering33
nbisweden/excelerate-scrnaseqAn open-source R package providing tools and methods for analyzing single cell RNA-seq data217
asncd/mimoscaA tool for designing and analyzing pooled single cell RNA-seq perturbation experiments to understand biological dynamics87
zjufanlab/sccatchAutomated tool for annotating cell types from single-cell RNA sequencing data based on marker genes219
qile0317/apackoftheclonesTools for visualizing and analyzing clonal expansion in immune cell populations14
xmc811/scillusA package for processing and visualizing single-cell RNA-seq data in R, providing an efficient and customizable framework for analyzing complex biological datasets.60
irrationone/cellassignAutomated assignment of cell types in single-cell RNA-seq data based on marker genes and patient/batch effects197
cahanlab/singlecellnetA package for classifying single-cell RNA-Seq data across species and platforms131
zjufanlab/spatalkAn R package that infers cell-cell communication and ligand-receptor-target networks from spatially resolved transcriptomic data61
immcore/is-cellrA web-based Shiny application for analyzing single-cell RNA sequencing data23
kharchenkolab/numbatAnalyzes single-cell RNA-seq data to detect allele-specific copy number variations and infer lineage relationships in cancer cells171