SCEVAN
Cell classifier
Automated tool for classifying cells in scRNA data and inferring copy number profiles of malignant cells.
R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the malignant cells. It also infers the copy number profile of malignant cells, identifies subclonal structures and analyses the specific and shared alterations of each subpopulation.
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last commit: over 2 years agoLinked from 1 awesome list
aneuploidyclonal-analysisclonal-evolutioncopy-number-variationcopynumbermicroenvironmentscrna-pipelinescrna-seqscrna-seq-analysissingle-cellsubclonal-deconvolutionsubclone-identificationtumor-classificationtumor-evolutiontumor-heterogeneity
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