TRAPeS
Sequence analyzer
Algorithmic software for analyzing single-cell RNA sequencing data to reconstruct T cell receptor sequences.
TCR Reconstruction Algorithm for Paired-End Single cell
14 stars
5 watching
8 forks
Language: Python
last commit: about 5 years ago
Linked from 1 awesome list
Related projects:
Repository | Description | Stars |
---|---|---|
yoseflab/fastproject | Provides tools and methods for visualizing and analyzing single cell RNA-seq data in low dimensions | 35 |
elementolab/sctcrseq | Recovering TCR sequences from single-cell RNA-seq data using a Python pipeline | 26 |
yoseflab/scone | Tools for quality control and normalization of single-cell RNA-seq data | 53 |
timoast/sinto | Tools for analyzing aligned single-cell data from sequencing experiments | 118 |
sidneycadot/oeis | Tools for analyzing and processing sequence data from the Online Encyclopedia of Integer Sequences. | 46 |
rabadanlab/sctda | An object-oriented Python library for analyzing single-cell RNA-seq data using topological representations | 7 |
iosonofabio/singlet | Analyzes single cell RNA sequence data with quantitative phenotypes | 13 |
yjzhang/uncurl_python | Analyzes single-cell RNA-seq data using statistical models and machine learning algorithms | 15 |
dtm2451/dittoseq | A suite of functions for analyzing and visualizing RNA sequencing data | 190 |
ucarlab/iasva | An R package that identifies hidden factors in data to uncover sources of variation | 8 |
cbg-ethz/scicone | A software tool for analyzing single-cell DNA sequencing data to reconstruct copy number events and cell histories in cancer research. | 20 |
snakemake-workflows/single-cell-rna-seq | A workflow generator for single-cell RNA-seq data analysis | 97 |
nghiavtr/bpsc | A package for analyzing single-cell RNA-seq data using a beta-Poisson model. | 16 |
kharchenkolab/numbat | Analyzes single-cell RNA-seq data to detect allele-specific copy number variations and infer lineage relationships in cancer cells | 166 |
rajewsky-lab/novosparc | Software tool to predict spatial locations of single cells in tissue using single-cell RNA sequencing data | 126 |